miRNA display CGI


Results 1 - 20 of 695 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6499 5' -57.1 NC_001847.1 + 134945 0.75 0.324405
Target:  5'- ----gGCGCCGGGGGCggggGCGGgGGCGGg -3'
miRNA:   3'- auuugCGCGGCUCUCG----UGCCgUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 134761 0.7 0.609637
Target:  5'- gGAGCGCGguCCG-GcGCGCGGCGcGCGGg -3'
miRNA:   3'- aUUUGCGC--GGCuCuCGUGCCGU-CGUC- -5'
6499 5' -57.1 NC_001847.1 + 134631 0.76 0.295521
Target:  5'- -cAGCGUggGCUGGGGGCGggcCGGCAGCAGg -3'
miRNA:   3'- auUUGCG--CGGCUCUCGU---GCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 134571 0.66 0.83476
Target:  5'- aGGACccgGCGCCG-GAGaCGCGGCgcuGGCGu -3'
miRNA:   3'- aUUUG---CGCGGCuCUC-GUGCCG---UCGUc -5'
6499 5' -57.1 NC_001847.1 + 134539 0.66 0.799744
Target:  5'- --cGCGCGCCGcu-GCggaGCGGCcGCGGa -3'
miRNA:   3'- auuUGCGCGGCucuCG---UGCCGuCGUC- -5'
6499 5' -57.1 NC_001847.1 + 134476 0.68 0.722832
Target:  5'- aUAGGCGCgGCCaacgaAGuGCACGGguGUAGu -3'
miRNA:   3'- -AUUUGCG-CGGc----UCuCGUGCCguCGUC- -5'
6499 5' -57.1 NC_001847.1 + 134234 0.69 0.651146
Target:  5'- ----gGCGCCGGcGGGCgGCGGcCGGCGGc -3'
miRNA:   3'- auuugCGCGGCU-CUCG-UGCC-GUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 134207 0.72 0.46934
Target:  5'- -cGGCGCGCgCGGgccGAGgGCGGCGGUGGg -3'
miRNA:   3'- auUUGCGCG-GCU---CUCgUGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 134154 0.69 0.640771
Target:  5'- --cGCGUGCCGcc-GC-CGGCGGCGGa -3'
miRNA:   3'- auuUGCGCGGCucuCGuGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 134124 0.72 0.488512
Target:  5'- -cGGCGCGCCGcGGGCGgCGGCcuGGUGGa -3'
miRNA:   3'- auUUGCGCGGCuCUCGU-GCCG--UCGUC- -5'
6499 5' -57.1 NC_001847.1 + 134008 0.7 0.584831
Target:  5'- --cGCGCGCCGAGGcgccgccGCuggugcuggaggccGCGGCGGCGc -3'
miRNA:   3'- auuUGCGCGGCUCU-------CG--------------UGCCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 133976 0.77 0.25601
Target:  5'- aAGGCGCcgggGCUGGGAGCGCGcGCGGCAu -3'
miRNA:   3'- aUUUGCG----CGGCUCUCGUGC-CGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 133948 0.66 0.808754
Target:  5'- -uGGCGC-CCGAcGAGCugccggccGCGGCGGUGGc -3'
miRNA:   3'- auUUGCGcGGCU-CUCG--------UGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 133744 0.66 0.83476
Target:  5'- ---cCGUGCCGccgcgcGAGUAcCGGCAGCGc -3'
miRNA:   3'- auuuGCGCGGCu-----CUCGU-GCCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 133628 0.7 0.558189
Target:  5'- --cGCGCGCCGAGGccgccuacGCGCGGCucuaccccgaGGCGc -3'
miRNA:   3'- auuUGCGCGGCUCU--------CGUGCCG----------UCGUc -5'
6499 5' -57.1 NC_001847.1 + 133520 0.67 0.732827
Target:  5'- --uGCGCGCCGcGGuGCugccGCGGC-GCAGu -3'
miRNA:   3'- auuUGCGCGGC-UCuCG----UGCCGuCGUC- -5'
6499 5' -57.1 NC_001847.1 + 133414 0.71 0.498234
Target:  5'- --uGCGCGCgGcuGGccgcGGCGCGGCGGCGGc -3'
miRNA:   3'- auuUGCGCGgC--UC----UCGUGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 133322 0.75 0.316992
Target:  5'- cGGGCGCGCCGGacguGAGCGCgcucGGCGcGCAGg -3'
miRNA:   3'- aUUUGCGCGGCU----CUCGUG----CCGU-CGUC- -5'
6499 5' -57.1 NC_001847.1 + 133030 0.67 0.762237
Target:  5'- gAGGCGCugGCCGAGAuCGCGGCccgccgccgcGCGGg -3'
miRNA:   3'- aUUUGCG--CGGCUCUcGUGCCGu---------CGUC- -5'
6499 5' -57.1 NC_001847.1 + 132792 0.76 0.281846
Target:  5'- -cGACGCgGCCGGGccGGCGCGGCGGgAGc -3'
miRNA:   3'- auUUGCG-CGGCUC--UCGUGCCGUCgUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.