miRNA display CGI


Results 1 - 20 of 695 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6499 5' -57.1 NC_001847.1 + 88853 0.66 0.83476
Target:  5'- cGGGCGCGacaugcugcUCGAGA-CGCGGCGGUAc -3'
miRNA:   3'- aUUUGCGC---------GGCUCUcGUGCCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 10242 0.66 0.827127
Target:  5'- -cGGCGCGCCuGccgggcccgcuuuucGGAGCcgagugcgacgugaGCGGCAGCGa -3'
miRNA:   3'- auUUGCGCGG-C---------------UCUCG--------------UGCCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 59208 0.66 0.82627
Target:  5'- --cGCGUGUgGcGGcGCACGGCGGCGc -3'
miRNA:   3'- auuUGCGCGgCuCU-CGUGCCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 14000 1.08 0.002057
Target:  5'- gUAAACGCGCCGAGAGCACGGCAGCAGg -3'
miRNA:   3'- -AUUUGCGCGGCUCUCGUGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 130135 0.66 0.83476
Target:  5'- ---uCGCGCgCGAGGGCGaGGC-GCAa -3'
miRNA:   3'- auuuGCGCG-GCUCUCGUgCCGuCGUc -5'
6499 5' -57.1 NC_001847.1 + 125072 0.66 0.83476
Target:  5'- --cGCGCGgCGGGGcGCugGGCccgcGCGGc -3'
miRNA:   3'- auuUGCGCgGCUCU-CGugCCGu---CGUC- -5'
6499 5' -57.1 NC_001847.1 + 99289 0.66 0.83476
Target:  5'- -cAGCGCGUCGAGguggcgccucAGCuCGcGCAGCGc -3'
miRNA:   3'- auUUGCGCGGCUC----------UCGuGC-CGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 50490 0.66 0.83476
Target:  5'- -cGGCGCGCUacaucgcccGAGCGCG-CAGCAGc -3'
miRNA:   3'- auUUGCGCGGcu-------CUCGUGCcGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 117479 0.66 0.83476
Target:  5'- --uGCGCGCCuGGAGCucUGGUuucagcgcgugGGCAGg -3'
miRNA:   3'- auuUGCGCGGcUCUCGu-GCCG-----------UCGUC- -5'
6499 5' -57.1 NC_001847.1 + 86305 0.66 0.833919
Target:  5'- --cGCGCgGCCGAGGcgcccccGCGCGGCaaGGCc- -3'
miRNA:   3'- auuUGCG-CGGCUCU-------CGUGCCG--UCGuc -5'
6499 5' -57.1 NC_001847.1 + 66985 0.66 0.83476
Target:  5'- gAGGCGgGCUGc-GGCGCGGCgccggagaaggGGCAGa -3'
miRNA:   3'- aUUUGCgCGGCucUCGUGCCG-----------UCGUC- -5'
6499 5' -57.1 NC_001847.1 + 2896 0.66 0.83476
Target:  5'- --cGCGCGUCGAGuaccGCGCGaGCGGgGc -3'
miRNA:   3'- auuUGCGCGGCUCu---CGUGC-CGUCgUc -5'
6499 5' -57.1 NC_001847.1 + 84450 0.66 0.83476
Target:  5'- --cGCGUGCCGGucgucgcgcGAGCACaGCccGCAGg -3'
miRNA:   3'- auuUGCGCGGCU---------CUCGUGcCGu-CGUC- -5'
6499 5' -57.1 NC_001847.1 + 19858 0.66 0.83476
Target:  5'- ---cCGCGcCCGGGGGCGcCGGCuuAGCc- -3'
miRNA:   3'- auuuGCGC-GGCUCUCGU-GCCG--UCGuc -5'
6499 5' -57.1 NC_001847.1 + 44803 0.66 0.83476
Target:  5'- cGAAaGCGCCGA--GCGCGGCAccGCGc -3'
miRNA:   3'- aUUUgCGCGGCUcuCGUGCCGU--CGUc -5'
6499 5' -57.1 NC_001847.1 + 14365 0.66 0.83476
Target:  5'- gGAACGcCGCC-AGcGCGCGGUcGUAGa -3'
miRNA:   3'- aUUUGC-GCGGcUCuCGUGCCGuCGUC- -5'
6499 5' -57.1 NC_001847.1 + 3928 0.66 0.83476
Target:  5'- --uGCGCGCCcgcgcuGGCGCcGCGGCGGg -3'
miRNA:   3'- auuUGCGCGGcuc---UCGUGcCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 122198 0.66 0.82627
Target:  5'- --cGCGCGCCGccacacuagccGGGGC-CGGguGCc- -3'
miRNA:   3'- auuUGCGCGGC-----------UCUCGuGCCguCGuc -5'
6499 5' -57.1 NC_001847.1 + 31758 0.66 0.83476
Target:  5'- aGGACccgGCGCCG-GAGaCGCGGCgcuGGCGu -3'
miRNA:   3'- aUUUG---CGCGGCuCUC-GUGCCG---UCGUc -5'
6499 5' -57.1 NC_001847.1 + 121866 0.66 0.83476
Target:  5'- --cGCGCGCacAGGGC-CGGCAccGCAGu -3'
miRNA:   3'- auuUGCGCGgcUCUCGuGCCGU--CGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.