miRNA display CGI


Results 81 - 100 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 30177 0.66 0.978926
Target:  5'- gCGCucgGCGGAccuGGCCGAcgcggugcgcGGCGCGCGCGc -3'
miRNA:   3'- gGCG---CGUCU---UUGGUU----------CUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 52429 0.66 0.978926
Target:  5'- cCCGCGCGuGGAGCacauGGAC-CugGaCGAc -3'
miRNA:   3'- -GGCGCGU-CUUUGgu--UCUGuGugC-GCU- -5'
6500 3' -52.4 NC_001847.1 + 44688 0.66 0.978926
Target:  5'- gCCGCGgAuGGGCCGcgcGGAC-CGCGCGc -3'
miRNA:   3'- -GGCGCgUcUUUGGU---UCUGuGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 134850 0.66 0.978926
Target:  5'- -gGCGCGGGGAC---GGCGCccGCGCGGg -3'
miRNA:   3'- ggCGCGUCUUUGguuCUGUG--UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 7053 0.66 0.978926
Target:  5'- uUGgGCuuucgccACCAAGGCACGCgGCGAg -3'
miRNA:   3'- gGCgCGucuu---UGGUUCUGUGUG-CGCU- -5'
6500 3' -52.4 NC_001847.1 + 107329 0.66 0.978693
Target:  5'- gCCGCGCGugcGCCGGGGCGCGaauggccagagccCGCa- -3'
miRNA:   3'- -GGCGCGUcuuUGGUUCUGUGU-------------GCGcu -5'
6500 3' -52.4 NC_001847.1 + 35173 0.66 0.978693
Target:  5'- aCCGC-CGGggGCaCGcggccuucgaggaGGAgCGCGCGCGGc -3'
miRNA:   3'- -GGCGcGUCuuUG-GU-------------UCU-GUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 29331 0.66 0.976513
Target:  5'- aCGCGguGGAGCgCGcgcGGCuccaGCGCGCGGc -3'
miRNA:   3'- gGCGCguCUUUG-GUu--CUG----UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 107642 0.66 0.976513
Target:  5'- gCCGCgGCGGcgGCCGAGGCcucuGC-CGcCGAa -3'
miRNA:   3'- -GGCG-CGUCuuUGGUUCUG----UGuGC-GCU- -5'
6500 3' -52.4 NC_001847.1 + 132144 0.66 0.976513
Target:  5'- aCGCGguGGAGCgCGcgcGGCuccaGCGCGCGGc -3'
miRNA:   3'- gGCGCguCUUUG-GUu--CUG----UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 36535 0.66 0.976513
Target:  5'- gCUGCGCgaggcGGAuuCgGAGAUugACGCGc -3'
miRNA:   3'- -GGCGCG-----UCUuuGgUUCUGugUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 34818 0.66 0.976513
Target:  5'- -gGCGCGGcAGGCCGaccGGGCGCugGaggCGAg -3'
miRNA:   3'- ggCGCGUC-UUUGGU---UCUGUGugC---GCU- -5'
6500 3' -52.4 NC_001847.1 + 110751 0.66 0.976513
Target:  5'- cCCGCGCGcgccgcGCCgGAGuucGCGCAUGCGGg -3'
miRNA:   3'- -GGCGCGUcuu---UGG-UUC---UGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 117727 0.66 0.976513
Target:  5'- gCCGCGacauGGgcACCAAGuCACAgCGCa- -3'
miRNA:   3'- -GGCGCg---UCuuUGGUUCuGUGU-GCGcu -5'
6500 3' -52.4 NC_001847.1 + 54705 0.66 0.976513
Target:  5'- cCCGCGgGGA-----GGACgACGCGCGGg -3'
miRNA:   3'- -GGCGCgUCUuugguUCUG-UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 22477 0.66 0.976513
Target:  5'- gCCGuCGCAGGugGGgCAAGGCugGcCGUGGc -3'
miRNA:   3'- -GGC-GCGUCU--UUgGUUCUGugU-GCGCU- -5'
6500 3' -52.4 NC_001847.1 + 54184 0.66 0.976513
Target:  5'- gCGCGCAGAAAgUCGccGCGCAaaaaGCGGc -3'
miRNA:   3'- gGCGCGUCUUU-GGUucUGUGUg---CGCU- -5'
6500 3' -52.4 NC_001847.1 + 54660 0.66 0.976513
Target:  5'- gCCGCGCugcGGAACgGGGA---GCGCGGc -3'
miRNA:   3'- -GGCGCGu--CUUUGgUUCUgugUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 125290 0.66 0.976513
Target:  5'- gCCGuCGCAGGugGGgCAAGGCugGcCGUGGc -3'
miRNA:   3'- -GGC-GCGUCU--UUgGUUCUGugU-GCGCU- -5'
6500 3' -52.4 NC_001847.1 + 18453 0.66 0.976261
Target:  5'- gCCGUGCGGu-GCCGcgcccgcagcgccGGACccACACGCa- -3'
miRNA:   3'- -GGCGCGUCuuUGGU-------------UCUG--UGUGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.