miRNA display CGI


Results 61 - 80 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 41135 0.66 0.980936
Target:  5'- -gGCGCGGAcauggcgucgucgAACCGcgAGugAgCGCGCGGc -3'
miRNA:   3'- ggCGCGUCU-------------UUGGU--UCugU-GUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 75107 0.66 0.980936
Target:  5'- cUCGCGCccgacgaAGAGGCCGAcGGCACGCu--- -3'
miRNA:   3'- -GGCGCG-------UCUUUGGUU-CUGUGUGcgcu -5'
6500 3' -52.4 NC_001847.1 + 42890 0.66 0.980502
Target:  5'- uCCGCGCcaAGAGcgcgagcugcagcgGCuCGAGAgCGCGCGCu- -3'
miRNA:   3'- -GGCGCG--UCUU--------------UG-GUUCU-GUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 134850 0.66 0.978926
Target:  5'- -gGCGCGGGGAC---GGCGCccGCGCGGg -3'
miRNA:   3'- ggCGCGUCUUUGguuCUGUG--UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 44688 0.66 0.978926
Target:  5'- gCCGCGgAuGGGCCGcgcGGAC-CGCGCGc -3'
miRNA:   3'- -GGCGCgUcUUUGGU---UCUGuGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 54437 0.66 0.978926
Target:  5'- cCCGgGCAGAGA-CGAGGgGgGCGgGGa -3'
miRNA:   3'- -GGCgCGUCUUUgGUUCUgUgUGCgCU- -5'
6500 3' -52.4 NC_001847.1 + 52429 0.66 0.978926
Target:  5'- cCCGCGCGuGGAGCacauGGAC-CugGaCGAc -3'
miRNA:   3'- -GGCGCGU-CUUUGgu--UCUGuGugC-GCU- -5'
6500 3' -52.4 NC_001847.1 + 30177 0.66 0.978926
Target:  5'- gCGCucgGCGGAccuGGCCGAcgcggugcgcGGCGCGCGCGc -3'
miRNA:   3'- gGCG---CGUCU---UUGGUU----------CUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 7053 0.66 0.978926
Target:  5'- uUGgGCuuucgccACCAAGGCACGCgGCGAg -3'
miRNA:   3'- gGCgCGucuu---UGGUUCUGUGUG-CGCU- -5'
6500 3' -52.4 NC_001847.1 + 131923 0.66 0.978926
Target:  5'- gCCGCgGCGGc-GCgGAGGCACGUGCGc -3'
miRNA:   3'- -GGCG-CGUCuuUGgUUCUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 52628 0.66 0.978926
Target:  5'- gCCGCGCGGAucGCCAcguugccgauGGccgcccGCACGgcCGCGGg -3'
miRNA:   3'- -GGCGCGUCUu-UGGU----------UC------UGUGU--GCGCU- -5'
6500 3' -52.4 NC_001847.1 + 129905 0.66 0.978926
Target:  5'- cCCcCGCGGAGACCugcacgGAGcCAUGCGCa- -3'
miRNA:   3'- -GGcGCGUCUUUGG------UUCuGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 2154 0.66 0.978926
Target:  5'- gCUGCGCAGc-ACCAGGucuCGCAgCGCc- -3'
miRNA:   3'- -GGCGCGUCuuUGGUUCu--GUGU-GCGcu -5'
6500 3' -52.4 NC_001847.1 + 116295 0.66 0.978926
Target:  5'- gCGUGCcccgcuGACCcgugcGGCGCGCGCGAg -3'
miRNA:   3'- gGCGCGucu---UUGGuu---CUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 110228 0.66 0.978926
Target:  5'- aCGUGCGGGccguGCUAA-ACAUGCGCGGc -3'
miRNA:   3'- gGCGCGUCUu---UGGUUcUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 111248 0.66 0.978926
Target:  5'- gCUGCGCccGAACCugccgcuGAUGCGCGCGc -3'
miRNA:   3'- -GGCGCGucUUUGGuu-----CUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 6402 0.66 0.978926
Target:  5'- gCCGCGaaGGAAACCAAGuCGgggaAgGCGAg -3'
miRNA:   3'- -GGCGCg-UCUUUGGUUCuGUg---UgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 36671 0.66 0.978926
Target:  5'- gCGUGCuGGAACCcgagcuGGCcaugcccuACACGCGAc -3'
miRNA:   3'- gGCGCGuCUUUGGuu----CUG--------UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 94851 0.66 0.978926
Target:  5'- uCUGCGCcgagGGGGACCuuGGgGgGCGCGGg -3'
miRNA:   3'- -GGCGCG----UCUUUGGuuCUgUgUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 100212 0.66 0.978926
Target:  5'- gCCGCGCAGcugcGCCAGcGGCG-GCGgGAc -3'
miRNA:   3'- -GGCGCGUCuu--UGGUU-CUGUgUGCgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.