miRNA display CGI


Results 41 - 60 of 777 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 10662 0.66 0.98115
Target:  5'- -aGCGCuuGGACUugaacGCGCACGCGAa -3'
miRNA:   3'- ggCGCGucUUUGGuuc--UGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 40941 0.66 0.98115
Target:  5'- gCCGcCGCAGGucGACCAuGGC-CA-GCGAc -3'
miRNA:   3'- -GGC-GCGUCU--UUGGUuCUGuGUgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 64340 0.66 0.98115
Target:  5'- cCCGCGU---GGCCuGGuACACGCGCu- -3'
miRNA:   3'- -GGCGCGucuUUGGuUC-UGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 134945 0.66 0.98115
Target:  5'- -gGCGcCGGggGCgGGGGCGgGgGCGGg -3'
miRNA:   3'- ggCGC-GUCuuUGgUUCUGUgUgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 62948 0.66 0.98115
Target:  5'- uCCGCGaccCGGAGu---AGGCACACGCa- -3'
miRNA:   3'- -GGCGC---GUCUUugguUCUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 11312 0.66 0.98115
Target:  5'- gCGCGCccgccGAGGCCGgcGGGCgGCugGCGc -3'
miRNA:   3'- gGCGCGu----CUUUGGU--UCUG-UGugCGCu -5'
6500 3' -52.4 NC_001847.1 + 61957 0.66 0.98115
Target:  5'- cCCGCGCGGGccGACUccGcCGC-CGCGu -3'
miRNA:   3'- -GGCGCGUCU--UUGGuuCuGUGuGCGCu -5'
6500 3' -52.4 NC_001847.1 + 32132 0.66 0.98115
Target:  5'- -gGCGcCGGggGCgGGGGCGgGgGCGGg -3'
miRNA:   3'- ggCGC-GUCuuUGgUUCUGUgUgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 13855 0.66 0.98115
Target:  5'- cUCGCGCGGuacAGCCugcuAG-CGgACGCGGc -3'
miRNA:   3'- -GGCGCGUCu--UUGGu---UCuGUgUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 8997 0.66 0.98115
Target:  5'- gCCGCGCuGuuuGCCAucguGCGCGgcCGCGAc -3'
miRNA:   3'- -GGCGCGuCuu-UGGUuc--UGUGU--GCGCU- -5'
6500 3' -52.4 NC_001847.1 + 36952 0.66 0.98115
Target:  5'- gCCGaGCGGggGCUgcGGCcaGCGCGGg -3'
miRNA:   3'- -GGCgCGUCuuUGGuuCUGugUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 77899 0.66 0.98115
Target:  5'- uCUGCGCGGcgGCgGuGGCGCACcucucgGCGAc -3'
miRNA:   3'- -GGCGCGUCuuUGgUuCUGUGUG------CGCU- -5'
6500 3' -52.4 NC_001847.1 + 80664 0.66 0.98115
Target:  5'- cCCgGCGCcgGGGAGCCGAacGGCuGCGCGCc- -3'
miRNA:   3'- -GG-CGCG--UCUUUGGUU--CUG-UGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 19121 0.66 0.98115
Target:  5'- gCGCGCAGugcACCGGcACAC-CGCa- -3'
miRNA:   3'- gGCGCGUCuu-UGGUUcUGUGuGCGcu -5'
6500 3' -52.4 NC_001847.1 + 69660 0.66 0.98115
Target:  5'- aCCGCGCcauGGACCGccAGAgcgagccucCGCGCGCGc -3'
miRNA:   3'- -GGCGCGuc-UUUGGU--UCU---------GUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 125440 0.66 0.98115
Target:  5'- cCCGCGCGuGGcuGGCCGgaGGACGgGCGgGu -3'
miRNA:   3'- -GGCGCGU-CU--UUGGU--UCUGUgUGCgCu -5'
6500 3' -52.4 NC_001847.1 + 38129 0.66 0.98115
Target:  5'- gUGCGcCGGgcACCGAGuCuuCGCGCGGc -3'
miRNA:   3'- gGCGC-GUCuuUGGUUCuGu-GUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 50583 0.66 0.98115
Target:  5'- aCGaCGaGGAGGCCGuguacgAGGCGCACGCc- -3'
miRNA:   3'- gGC-GCgUCUUUGGU------UCUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 57322 0.66 0.98115
Target:  5'- gCGCGCAaaaAGGCC--GGCACGCGCc- -3'
miRNA:   3'- gGCGCGUc--UUUGGuuCUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 70663 0.66 0.980936
Target:  5'- gCCGCGCAucuGCUggGGCugGaggggacCGCGGg -3'
miRNA:   3'- -GGCGCGUcuuUGGuuCUGugU-------GCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.