Results 41 - 60 of 777 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 9494 | 0.75 | 0.604995 |
Target: 5'- aCCGCGCcGGugGACCAGGGCgACAuUGCGAg -3' miRNA: 3'- -GGCGCGuCU--UUGGUUCUG-UGU-GCGCU- -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 38602 | 0.75 | 0.604995 |
Target: 5'- gCGCGCGGcuGCaCAGccGGCGCGCGCGGu -3' miRNA: 3'- gGCGCGUCuuUG-GUU--CUGUGUGCGCU- -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 38209 | 0.75 | 0.604995 |
Target: 5'- gCCGCccGCGGAGGCCcGGGC-CGCGCGc -3' miRNA: 3'- -GGCG--CGUCUUUGGuUCUGuGUGCGCu -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 73932 | 0.75 | 0.615457 |
Target: 5'- aCCGCGCAGccggcgcguACCu-GGCGCGCGCGc -3' miRNA: 3'- -GGCGCGUCuu-------UGGuuCUGUGUGCGCu -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 32211 | 0.75 | 0.615457 |
Target: 5'- aCCGCgGCcuuGGAcGCCGuccAGGCGCACGCGGc -3' miRNA: 3'- -GGCG-CG---UCUuUGGU---UCUGUGUGCGCU- -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 72990 | 0.75 | 0.615457 |
Target: 5'- cCCGCGCGGGAgcugGCCGcaGCGCggGCGCGGa -3' miRNA: 3'- -GGCGCGUCUU----UGGUucUGUG--UGCGCU- -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 119269 | 0.75 | 0.625931 |
Target: 5'- cCCGCGCGGcucgucgaGGGCCAGuaccGACGCGCGCu- -3' miRNA: 3'- -GGCGCGUC--------UUUGGUU----CUGUGUGCGcu -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 101890 | 0.75 | 0.635363 |
Target: 5'- gCGCGCGGAccgcggcAGCgGAGGCGC-CGCGGc -3' miRNA: 3'- gGCGCGUCU-------UUGgUUCUGUGuGCGCU- -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 133978 | 0.75 | 0.636411 |
Target: 5'- -gGCGCcGggGCUggGAgCGCGCGCGGc -3' miRNA: 3'- ggCGCGuCuuUGGuuCU-GUGUGCGCU- -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 35294 | 0.75 | 0.636411 |
Target: 5'- aCUGCGCAGccccGCCGAGcgGCGCGCGCu- -3' miRNA: 3'- -GGCGCGUCuu--UGGUUC--UGUGUGCGcu -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 106601 | 0.75 | 0.636411 |
Target: 5'- cCCGCGCc---GCCGAaGCGCACGCGGc -3' miRNA: 3'- -GGCGCGucuuUGGUUcUGUGUGCGCU- -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 3788 | 0.75 | 0.636411 |
Target: 5'- cCCGCGCc---GCCGAaGCGCACGCGGc -3' miRNA: 3'- -GGCGCGucuuUGGUUcUGUGUGCGCU- -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 60851 | 0.75 | 0.646887 |
Target: 5'- gCUGCGCGGc-GCCAGGGCGuccaGCGCGGg -3' miRNA: 3'- -GGCGCGUCuuUGGUUCUGUg---UGCGCU- -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 73201 | 0.75 | 0.646887 |
Target: 5'- cCCGCGCGGGccgcGCCGccGCugACGCGGa -3' miRNA: 3'- -GGCGCGUCUu---UGGUucUGugUGCGCU- -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 35225 | 0.75 | 0.646887 |
Target: 5'- gCGCGCGGAcgugcugcaggcGGCCGgcGGGCGCGCgGCGGa -3' miRNA: 3'- gGCGCGUCU------------UUGGU--UCUGUGUG-CGCU- -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 99467 | 0.75 | 0.646887 |
Target: 5'- gCGCGCcgcucGggGCCAAGAUcaGCGCGAu -3' miRNA: 3'- gGCGCGu----CuuUGGUUCUGugUGCGCU- -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 68978 | 0.75 | 0.646887 |
Target: 5'- cCCGCGCGGGcacGGCCGAGA-GCACGUc- -3' miRNA: 3'- -GGCGCGUCU---UUGGUUCUgUGUGCGcu -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 118833 | 0.75 | 0.646887 |
Target: 5'- -gGCGCGG-AGCCgAGGGCGCgaGCGCGAg -3' miRNA: 3'- ggCGCGUCuUUGG-UUCUGUG--UGCGCU- -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 49286 | 0.75 | 0.657351 |
Target: 5'- gCCGCGCGG-AGCCGcGACucgcuGCugGCGGu -3' miRNA: 3'- -GGCGCGUCuUUGGUuCUG-----UGugCGCU- -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 70449 | 0.75 | 0.657351 |
Target: 5'- gCCGCGCcuGAcgcACUgcGACACGCGCGGg -3' miRNA: 3'- -GGCGCGu-CUu--UGGuuCUGUGUGCGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home