miRNA display CGI


Results 21 - 40 of 777 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 2583 0.77 0.502719
Target:  5'- cCUGCGCGGccGCCGcGGcCGCACGCGAg -3'
miRNA:   3'- -GGCGCGUCuuUGGUuCU-GUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 61592 0.77 0.512657
Target:  5'- aCCGCGCAcucaaAGGCCGAG-UACGCGCGGu -3'
miRNA:   3'- -GGCGCGUc----UUUGGUUCuGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 58056 0.77 0.522675
Target:  5'- gCGCGCGGGccGCCGAuuGGCGCGCGCGc -3'
miRNA:   3'- gGCGCGUCUu-UGGUU--CUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 101484 0.77 0.522675
Target:  5'- cCCGCGCGGGccgcGGCCAcGcGCGCGCGCGc -3'
miRNA:   3'- -GGCGCGUCU----UUGGUuC-UGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 96903 0.77 0.522675
Target:  5'- cUCGCGCGGGAcuggcgGCCGcguAGAgGCGCGCGGc -3'
miRNA:   3'- -GGCGCGUCUU------UGGU---UCUgUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 118468 0.77 0.522675
Target:  5'- cCCGCGCA---GCCAAGGC-UGCGCGAc -3'
miRNA:   3'- -GGCGCGUcuuUGGUUCUGuGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 95033 0.77 0.522675
Target:  5'- aCGCGCAGccgcaccuaccAACCGAGGCACcgGCGCGGc -3'
miRNA:   3'- gGCGCGUCu----------UUGGUUCUGUG--UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 118247 0.77 0.522675
Target:  5'- cCCGCGC-GAGACCGGcGACGCA-GCGGu -3'
miRNA:   3'- -GGCGCGuCUUUGGUU-CUGUGUgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 5216 0.77 0.532768
Target:  5'- cUCGcCGCGGcgGCCGgcgGGGCGCGCGCGGc -3'
miRNA:   3'- -GGC-GCGUCuuUGGU---UCUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 108029 0.77 0.532768
Target:  5'- cUCGcCGCGGcgGCCGgcgGGGCGCGCGCGGc -3'
miRNA:   3'- -GGC-GCGUCuuUGGU---UCUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 105735 0.77 0.540892
Target:  5'- gCGCGCAGGucaAACCAGGuuaggagggccuCGCGCGCGGc -3'
miRNA:   3'- gGCGCGUCU---UUGGUUCu-----------GUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 67284 0.76 0.553154
Target:  5'- gCGCGCGGGGACUuGGugGC-CGCGGc -3'
miRNA:   3'- gGCGCGUCUUUGGuUCugUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 60856 0.76 0.563436
Target:  5'- uCCGCGCccgccGAGGCCAgcgcAGcGCGCGCGCGGg -3'
miRNA:   3'- -GGCGCGu----CUUUGGU----UC-UGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 125234 0.76 0.563436
Target:  5'- uCCGCggggGCGGGGcCCGAGAC-CACGCGGu -3'
miRNA:   3'- -GGCG----CGUCUUuGGUUCUGuGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 22421 0.76 0.563436
Target:  5'- uCCGCggggGCGGGGcCCGAGAC-CACGCGGu -3'
miRNA:   3'- -GGCG----CGUCUUuGGUUCUGuGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 81693 0.76 0.594555
Target:  5'- gCCGcCGUAGAGcGCC-AGGCGCGCGCGc -3'
miRNA:   3'- -GGC-GCGUCUU-UGGuUCUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 103801 0.76 0.594555
Target:  5'- gCGUGUAGAAGCCGcacuccccAuACACGCGCGAa -3'
miRNA:   3'- gGCGCGUCUUUGGU--------UcUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 33545 0.75 0.604995
Target:  5'- aCGCGgAGGuugagUCGAGGCGCACGCGGg -3'
miRNA:   3'- gGCGCgUCUuu---GGUUCUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 53350 0.75 0.604995
Target:  5'- uCCGCGUAGGccACCAGGuccgcguCAUACGCGGg -3'
miRNA:   3'- -GGCGCGUCUu-UGGUUCu------GUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 9494 0.75 0.604995
Target:  5'- aCCGCGCcGGugGACCAGGGCgACAuUGCGAg -3'
miRNA:   3'- -GGCGCGuCU--UUGGUUCUG-UGU-GCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.