miRNA display CGI


Results 21 - 40 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 95338 0.66 0.975751
Target:  5'- cCCGcCGCGGAcgacgcggucgacuGGCgGGGGCugGCgGCGGa -3'
miRNA:   3'- -GGC-GCGUCU--------------UUGgUUCUGugUG-CGCU- -5'
6500 3' -52.4 NC_001847.1 + 133551 0.66 0.971089
Target:  5'- gCCGCGCGcuGGcCCGAGcggcGCGCugGCGc -3'
miRNA:   3'- -GGCGCGUcuUU-GGUUC----UGUGugCGCu -5'
6500 3' -52.4 NC_001847.1 + 10662 0.66 0.98115
Target:  5'- -aGCGCuuGGACUugaacGCGCACGCGAa -3'
miRNA:   3'- ggCGCGucUUUGGuuc--UGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 91720 0.66 0.971089
Target:  5'- aCCGCGCGacgcGAGGCCcAGcugcagcgcccuGCGCGCGuCGGc -3'
miRNA:   3'- -GGCGCGU----CUUUGGuUC------------UGUGUGC-GCU- -5'
6500 3' -52.4 NC_001847.1 + 132144 0.66 0.976513
Target:  5'- aCGCGguGGAGCgCGcgcGGCuccaGCGCGCGGc -3'
miRNA:   3'- gGCGCguCUUUG-GUu--CUG----UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 69350 0.66 0.971089
Target:  5'- gCgGCGCuGguGCU--GGCGCGCGCGGc -3'
miRNA:   3'- -GgCGCGuCuuUGGuuCUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 36952 0.66 0.98115
Target:  5'- gCCGaGCGGggGCUgcGGCcaGCGCGGg -3'
miRNA:   3'- -GGCgCGUCuuUGGuuCUGugUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 35009 0.66 0.973903
Target:  5'- cCCGgcCGCGGAcgugGGCCA--GCugACGCGGu -3'
miRNA:   3'- -GGC--GCGUCU----UUGGUucUGugUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 87993 0.66 0.974971
Target:  5'- cCCGgcUGCAGAAGagcacgcaaaccuucCCGGGcCACGCGCGc -3'
miRNA:   3'- -GGC--GCGUCUUU---------------GGUUCuGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 41135 0.66 0.980936
Target:  5'- -gGCGCGGAcauggcgucgucgAACCGcgAGugAgCGCGCGGc -3'
miRNA:   3'- ggCGCGUCU-------------UUGGU--UCugU-GUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 35173 0.66 0.978693
Target:  5'- aCCGC-CGGggGCaCGcggccuucgaggaGGAgCGCGCGCGGc -3'
miRNA:   3'- -GGCGcGUCuuUG-GU-------------UCU-GUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 58687 0.66 0.971089
Target:  5'- -gGCgGCAGGcuGGCCAuGGCGCugGCa- -3'
miRNA:   3'- ggCG-CGUCU--UUGGUuCUGUGugCGcu -5'
6500 3' -52.4 NC_001847.1 + 7053 0.66 0.978926
Target:  5'- uUGgGCuuucgccACCAAGGCACGCgGCGAg -3'
miRNA:   3'- gGCgCGucuu---UGGUUCUGUGUG-CGCU- -5'
6500 3' -52.4 NC_001847.1 + 36535 0.66 0.976513
Target:  5'- gCUGCGCgaggcGGAuuCgGAGAUugACGCGc -3'
miRNA:   3'- -GGCGCG-----UCUuuGgUUCUGugUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 134850 0.66 0.978926
Target:  5'- -gGCGCGGGGAC---GGCGCccGCGCGGg -3'
miRNA:   3'- ggCGCGUCUUUGguuCUGUG--UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 90010 0.66 0.971089
Target:  5'- aCCcCGCAGAAggcGCCGAGcuGCACcuGCGCu- -3'
miRNA:   3'- -GGcGCGUCUU---UGGUUC--UGUG--UGCGcu -5'
6500 3' -52.4 NC_001847.1 + 34818 0.66 0.976513
Target:  5'- -gGCGCGGcAGGCCGaccGGGCGCugGaggCGAg -3'
miRNA:   3'- ggCGCGUC-UUUGGU---UCUGUGugC---GCU- -5'
6500 3' -52.4 NC_001847.1 + 6402 0.66 0.978926
Target:  5'- gCCGCGaaGGAAACCAAGuCGgggaAgGCGAg -3'
miRNA:   3'- -GGCGCg-UCUUUGGUUCuGUg---UgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 110751 0.66 0.976513
Target:  5'- cCCGCGCGcgccgcGCCgGAGuucGCGCAUGCGGg -3'
miRNA:   3'- -GGCGCGUcuu---UGG-UUC---UGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 18453 0.66 0.976261
Target:  5'- gCCGUGCGGu-GCCGcgcccgcagcgccGGACccACACGCa- -3'
miRNA:   3'- -GGCGCGUCuuUGGU-------------UCUG--UGUGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.