miRNA display CGI


Results 21 - 40 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 3910 0.66 0.981988
Target:  5'- gCCaGCGCGGgcGCCGGuugcgcgcccgcgcuGGCGC-CGCGGc -3'
miRNA:   3'- -GG-CGCGUCuuUGGUU---------------CUGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 3980 0.68 0.940476
Target:  5'- -gGCGcCGGggGCCGGGcGCGCGgcccCGCGGg -3'
miRNA:   3'- ggCGC-GUCuuUGGUUC-UGUGU----GCGCU- -5'
6500 3' -52.4 NC_001847.1 + 4205 0.69 0.907272
Target:  5'- gCGCGCAGGcAGCCAAaGCcCuGCGCGGu -3'
miRNA:   3'- gGCGCGUCU-UUGGUUcUGuG-UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 4448 0.67 0.968064
Target:  5'- aCGCGCAc--GCCGugaaAGGC-CGCGCGGu -3'
miRNA:   3'- gGCGCGUcuuUGGU----UCUGuGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 5097 0.67 0.9565
Target:  5'- gCCGUcgccuagguugcuaGCGGcgGCCGaaGGGCACGCGCu- -3'
miRNA:   3'- -GGCG--------------CGUCuuUGGU--UCUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 5216 0.77 0.532768
Target:  5'- cUCGcCGCGGcgGCCGgcgGGGCGCGCGCGGc -3'
miRNA:   3'- -GGC-GCGUCuuUGGU---UCUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 5592 0.71 0.815391
Target:  5'- gCCGCGCGGuagcuCCAcucgguAGACGgGCGUGGg -3'
miRNA:   3'- -GGCGCGUCuuu--GGU------UCUGUgUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 6087 0.79 0.445028
Target:  5'- gCGCGCucgcGGAGGCgCGAGACGCcCGCGAg -3'
miRNA:   3'- gGCGCG----UCUUUG-GUUCUGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 6284 0.7 0.883083
Target:  5'- cUCGCGCAGGcagcgGACCucGGCgaggucggccucgauGCGCGCGGc -3'
miRNA:   3'- -GGCGCGUCU-----UUGGuuCUG---------------UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 6402 0.66 0.978926
Target:  5'- gCCGCGaaGGAAACCAAGuCGgggaAgGCGAg -3'
miRNA:   3'- -GGCGCg-UCUUUGGUUCuGUg---UgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 6683 0.73 0.759267
Target:  5'- gCCGCgGCGGccGGCC-GGGCGCGCGCGc -3'
miRNA:   3'- -GGCG-CGUCu-UUGGuUCUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 7053 0.66 0.978926
Target:  5'- uUGgGCuuucgccACCAAGGCACGCgGCGAg -3'
miRNA:   3'- gGCgCGucuu---UGGUUCUGUGUG-CGCU- -5'
6500 3' -52.4 NC_001847.1 + 7255 0.7 0.88733
Target:  5'- gCUGUGCGGgcGCgGcGGGgGCACGCGAg -3'
miRNA:   3'- -GGCGCGUCuuUGgU-UCUgUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 7421 0.72 0.77855
Target:  5'- aCGCgGCGGcuuGCCAAGGCGCagucgcuaGCGCGGa -3'
miRNA:   3'- gGCG-CGUCuu-UGGUUCUGUG--------UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 7742 0.67 0.961352
Target:  5'- -gGCGCGGAGgcggcgGCCAGGGCAaGCcCGAc -3'
miRNA:   3'- ggCGCGUCUU------UGGUUCUGUgUGcGCU- -5'
6500 3' -52.4 NC_001847.1 + 8070 0.7 0.88733
Target:  5'- gCGCGCAGAGG--GGGGCACcgcCGCGGc -3'
miRNA:   3'- gGCGCGUCUUUggUUCUGUGu--GCGCU- -5'
6500 3' -52.4 NC_001847.1 + 8104 0.66 0.983193
Target:  5'- gCGaCGCGGc-GCCAGcGCAgGCGCGGg -3'
miRNA:   3'- gGC-GCGUCuuUGGUUcUGUgUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 8997 0.66 0.98115
Target:  5'- gCCGCGCuGuuuGCCAucguGCGCGgcCGCGAc -3'
miRNA:   3'- -GGCGCGuCuu-UGGUuc--UGUGU--GCGCU- -5'
6500 3' -52.4 NC_001847.1 + 9075 0.68 0.940476
Target:  5'- -aGCGCAG--GCUGcuACGCGCGCGGg -3'
miRNA:   3'- ggCGCGUCuuUGGUucUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 9494 0.75 0.604995
Target:  5'- aCCGCGCcGGugGACCAGGGCgACAuUGCGAg -3'
miRNA:   3'- -GGCGCGuCU--UUGGUUCUG-UGU-GCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.