miRNA display CGI


Results 41 - 60 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 9720 0.67 0.964145
Target:  5'- aCGCGCGGGuccuccggcggcGCCGGGGCAguCGCc- -3'
miRNA:   3'- gGCGCGUCUu-----------UGGUUCUGUguGCGcu -5'
6500 3' -52.4 NC_001847.1 + 10043 0.68 0.949551
Target:  5'- uCCGCGUucgucacGGCCGAcACGCGCGCGc -3'
miRNA:   3'- -GGCGCGucu----UUGGUUcUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 10067 0.71 0.841223
Target:  5'- gCCGCGCGGGcccagcGCCccGcCGCGCGCGGg -3'
miRNA:   3'- -GGCGCGUCUu-----UGGuuCuGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 10150 0.67 0.957655
Target:  5'- gCGCgaGCGGGAggGCUuuuucGACGCGCGCGGc -3'
miRNA:   3'- gGCG--CGUCUU--UGGuu---CUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 10662 0.66 0.98115
Target:  5'- -aGCGCuuGGACUugaacGCGCACGCGAa -3'
miRNA:   3'- ggCGCGucUUUGGuuc--UGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 10837 0.72 0.77855
Target:  5'- cCUGCGCGcGAcggcggcgcguGGCCGAGGCGCggcggGCGCGGg -3'
miRNA:   3'- -GGCGCGU-CU-----------UUGGUUCUGUG-----UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 10926 0.67 0.961352
Target:  5'- aCCGCGaGGcGAGCC--GGCugGCGCGGc -3'
miRNA:   3'- -GGCGCgUC-UUUGGuuCUGugUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 11168 0.67 0.96482
Target:  5'- aCCgGCGuCGGGAGCUggGGCugccgcuggucCGCGCGGg -3'
miRNA:   3'- -GG-CGC-GUCUUUGGuuCUGu----------GUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 11271 0.68 0.935567
Target:  5'- -gGCGCuGGGcuuccugaauuACCAAG-UACGCGCGAa -3'
miRNA:   3'- ggCGCGuCUU-----------UGGUUCuGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 11312 0.66 0.98115
Target:  5'- gCGCGCccgccGAGGCCGgcGGGCgGCugGCGc -3'
miRNA:   3'- gGCGCGu----CUUUGGU--UCUG-UGugCGCu -5'
6500 3' -52.4 NC_001847.1 + 11361 0.71 0.849446
Target:  5'- gCCGCGCAGGccCCGAGGCcaAUGCa- -3'
miRNA:   3'- -GGCGCGUCUuuGGUUCUGugUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 11830 0.68 0.940476
Target:  5'- gCGCGCGGggGggGGGGCGCcuaGCGGa -3'
miRNA:   3'- gGCGCGUCuuUggUUCUGUGug-CGCU- -5'
6500 3' -52.4 NC_001847.1 + 12061 0.7 0.88733
Target:  5'- gCGCuGCGGAcGCCGAGGCcgcggaGCGcCGCGGg -3'
miRNA:   3'- gGCG-CGUCUuUGGUUCUG------UGU-GCGCU- -5'
6500 3' -52.4 NC_001847.1 + 12431 0.71 0.849446
Target:  5'- -aGUGCGGGcuCCAAGGCgccggcacagcGCGCGCGGc -3'
miRNA:   3'- ggCGCGUCUuuGGUUCUG-----------UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 12764 0.7 0.88733
Target:  5'- uUCGCGCAGAugUCGcuGGACGCGCuGUGc -3'
miRNA:   3'- -GGCGCGUCUuuGGU--UCUGUGUG-CGCu -5'
6500 3' -52.4 NC_001847.1 + 12917 0.68 0.935567
Target:  5'- gCCGUGCcGccGCgGGGGCGCGCGUGu -3'
miRNA:   3'- -GGCGCGuCuuUGgUUCUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 13235 0.68 0.949551
Target:  5'- uCCGCGau--GGCCAgcgGGGC-CACGCGGg -3'
miRNA:   3'- -GGCGCgucuUUGGU---UCUGuGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 13616 0.68 0.940476
Target:  5'- cCCGgaaCGCAGcu-CgCGGGACACACGCa- -3'
miRNA:   3'- -GGC---GCGUCuuuG-GUUCUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 13664 0.67 0.957655
Target:  5'- uCCgGCGCGGugugGAACCAcGAgcCGCGCGAg -3'
miRNA:   3'- -GG-CGCGUC----UUUGGUuCUguGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 13801 1.12 0.004253
Target:  5'- gCCGCGCAGAAACCAAGACACACGCGAg -3'
miRNA:   3'- -GGCGCGUCUUUGGUUCUGUGUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.