miRNA display CGI


Results 21 - 40 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 133285 0.67 0.968064
Target:  5'- gCCGCGCGGugcGCUccGGCGCAgagUGCGu -3'
miRNA:   3'- -GGCGCGUCuu-UGGuuCUGUGU---GCGCu -5'
6500 3' -52.4 NC_001847.1 + 133058 0.7 0.894219
Target:  5'- gCCGCGCGGGccCCGcgGGGCGCuCGCc- -3'
miRNA:   3'- -GGCGCGUCUuuGGU--UCUGUGuGCGcu -5'
6500 3' -52.4 NC_001847.1 + 133004 0.68 0.945136
Target:  5'- gCUGCGCAGcgcAAACCugguAGACGCAC-UGGc -3'
miRNA:   3'- -GGCGCGUC---UUUGGu---UCUGUGUGcGCU- -5'
6500 3' -52.4 NC_001847.1 + 132916 0.72 0.78799
Target:  5'- cCCGCGCccagcGCCGcGGCGCugGCGGc -3'
miRNA:   3'- -GGCGCGucuu-UGGUuCUGUGugCGCU- -5'
6500 3' -52.4 NC_001847.1 + 132738 0.67 0.961352
Target:  5'- gCgGCGCAGcGAGCCAcGGCcgaGCGCGu -3'
miRNA:   3'- -GgCGCGUC-UUUGGUuCUGug-UGCGCu -5'
6500 3' -52.4 NC_001847.1 + 132576 0.66 0.973631
Target:  5'- gCCGCGCAGgcGCCcgcgccgAAGACAgCcCGCc- -3'
miRNA:   3'- -GGCGCGUCuuUGG-------UUCUGU-GuGCGcu -5'
6500 3' -52.4 NC_001847.1 + 132436 0.66 0.982997
Target:  5'- -gGUGgAGGAcaugaggGCCGGGGCGC-CGCGGg -3'
miRNA:   3'- ggCGCgUCUU-------UGGUUCUGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 132353 0.66 0.973631
Target:  5'- gCCGCGCucgcggcccuGGAGGCCGccggcggGGGCGCcgGCGCc- -3'
miRNA:   3'- -GGCGCG----------UCUUUGGU-------UCUGUG--UGCGcu -5'
6500 3' -52.4 NC_001847.1 + 132282 0.78 0.473432
Target:  5'- cCCGCGCGucGGCCuGGGCGCugGCGc -3'
miRNA:   3'- -GGCGCGUcuUUGGuUCUGUGugCGCu -5'
6500 3' -52.4 NC_001847.1 + 132206 0.72 0.768972
Target:  5'- gCCGCGCuGGAGGCgGccGCGCugGCGGc -3'
miRNA:   3'- -GGCGCG-UCUUUGgUucUGUGugCGCU- -5'
6500 3' -52.4 NC_001847.1 + 132144 0.66 0.976513
Target:  5'- aCGCGguGGAGCgCGcgcGGCuccaGCGCGCGGc -3'
miRNA:   3'- gGCGCguCUUUG-GUu--CUG----UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 131923 0.66 0.978926
Target:  5'- gCCGCgGCGGc-GCgGAGGCACGUGCGc -3'
miRNA:   3'- -GGCG-CGUCuuUGgUUCUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 131883 0.68 0.947814
Target:  5'- gCCGCGCGGcGccggcgccccugccGCCGgcgagcacggcgcGGGCGgCGCGCGAg -3'
miRNA:   3'- -GGCGCGUCuU--------------UGGU-------------UCUGU-GUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 131849 0.66 0.973903
Target:  5'- gCCGCGCuc--GCCGAGcUGCGCGCc- -3'
miRNA:   3'- -GGCGCGucuuUGGUUCuGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 131688 0.7 0.857463
Target:  5'- gCCGCGCAGAAcgcGCUGuGGGCgcugccGCACGUGGc -3'
miRNA:   3'- -GGCGCGUCUU---UGGU-UCUG------UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 131608 0.68 0.949551
Target:  5'- gCGUGCAGGGcuGCCGGGGC-CACaGCu- -3'
miRNA:   3'- gGCGCGUCUU--UGGUUCUGuGUG-CGcu -5'
6500 3' -52.4 NC_001847.1 + 131485 0.67 0.961352
Target:  5'- aCGCGgGGAAGCaguacgcGGCGCugGUGGa -3'
miRNA:   3'- gGCGCgUCUUUGguu----CUGUGugCGCU- -5'
6500 3' -52.4 NC_001847.1 + 131423 0.72 0.77855
Target:  5'- gCGCGCcGugGCC--GGCGCGCGCGAu -3'
miRNA:   3'- gGCGCGuCuuUGGuuCUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 131248 0.72 0.77855
Target:  5'- cCCGCGCuGGcuacGCCGcGGCGcCGCGCGAc -3'
miRNA:   3'- -GGCGCGuCUu---UGGUuCUGU-GUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 131079 0.67 0.96482
Target:  5'- gCCGagGCuGAGGCCGGGACugGgGCc- -3'
miRNA:   3'- -GGCg-CGuCUUUGGUUCUGugUgCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.