miRNA display CGI


Results 1 - 20 of 777 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 135023 0.72 0.77855
Target:  5'- cCCGCGgGcGggGCCGGGGCGCgggGCGCc- -3'
miRNA:   3'- -GGCGCgU-CuuUGGUUCUGUG---UGCGcu -5'
6500 3' -52.4 NC_001847.1 + 134945 0.66 0.98115
Target:  5'- -gGCGcCGGggGCgGGGGCGgGgGCGGg -3'
miRNA:   3'- ggCGC-GUCuuUGgUUCUGUgUgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 134850 0.66 0.978926
Target:  5'- -gGCGCGGGGAC---GGCGCccGCGCGGg -3'
miRNA:   3'- ggCGCGUCUUUGguuCUGUG--UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 134781 0.7 0.885217
Target:  5'- gCGCGCGGGGcgggccCCGGGGCGCgaagcccgggagggACGCGGg -3'
miRNA:   3'- gGCGCGUCUUu-----GGUUCUGUG--------------UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 134684 0.69 0.925
Target:  5'- aCgGCGCcGAAGCUAgugagagcGGACGCcCGCGGu -3'
miRNA:   3'- -GgCGCGuCUUUGGU--------UCUGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 134650 0.66 0.978926
Target:  5'- gCCGgcaGCAGgcGCgGAGGCGCGgGCa- -3'
miRNA:   3'- -GGCg--CGUCuuUGgUUCUGUGUgCGcu -5'
6500 3' -52.4 NC_001847.1 + 134558 0.68 0.930408
Target:  5'- gCCGCGgAG-GGCCAGGACccggcgccggAgACGCGGc -3'
miRNA:   3'- -GGCGCgUCuUUGGUUCUG----------UgUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 134513 0.69 0.91934
Target:  5'- gCCGUGCG---GCCGcGGCGCAUGUGGu -3'
miRNA:   3'- -GGCGCGUcuuUGGUuCUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 134190 0.67 0.957655
Target:  5'- cCCgGCGCAGcgugGAGC---GGCGCGCGCGGg -3'
miRNA:   3'- -GG-CGCGUC----UUUGguuCUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 134070 0.69 0.900867
Target:  5'- cCCgGCGUGGAcugggacgcgGACCAGGGCcCGCGgGAg -3'
miRNA:   3'- -GG-CGCGUCU----------UUGGUUCUGuGUGCgCU- -5'
6500 3' -52.4 NC_001847.1 + 134020 0.66 0.976261
Target:  5'- aCGgGCGGucucGCCAgcgucgcAGGgGCACGCGGc -3'
miRNA:   3'- gGCgCGUCuu--UGGU-------UCUgUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 133992 0.7 0.865266
Target:  5'- gCCGCGCugccGGAGccgcgcGCCGAGGCGC-CGCc- -3'
miRNA:   3'- -GGCGCG----UCUU------UGGUUCUGUGuGCGcu -5'
6500 3' -52.4 NC_001847.1 + 133978 0.75 0.636411
Target:  5'- -gGCGCcGggGCUggGAgCGCGCGCGGc -3'
miRNA:   3'- ggCGCGuCuuUGGuuCU-GUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 133931 0.69 0.907272
Target:  5'- cCCGCGCgcuaaaAGAAcACCGAG-CGCACG-GAg -3'
miRNA:   3'- -GGCGCG------UCUU-UGGUUCuGUGUGCgCU- -5'
6500 3' -52.4 NC_001847.1 + 133624 0.72 0.797283
Target:  5'- uUCGCGCGc--GCCGAGGCcgccuACGCGCGGc -3'
miRNA:   3'- -GGCGCGUcuuUGGUUCUG-----UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 133606 0.67 0.964484
Target:  5'- gCGgGCGGGcuugggcGGCaCAAG-CGCGCGCGGg -3'
miRNA:   3'- gGCgCGUCU-------UUG-GUUCuGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 133551 0.66 0.971089
Target:  5'- gCCGCGCGcuGGcCCGAGcggcGCGCugGCGc -3'
miRNA:   3'- -GGCGCGUcuUU-GGUUC----UGUGugCGCu -5'
6500 3' -52.4 NC_001847.1 + 133525 0.69 0.91343
Target:  5'- gCCGCGguGcuGCCGcGGCGCAgUGCGc -3'
miRNA:   3'- -GGCGCguCuuUGGUuCUGUGU-GCGCu -5'
6500 3' -52.4 NC_001847.1 + 133479 0.69 0.900867
Target:  5'- gCCGCGCGacGGcccGGCCGucgggcAGGCGCACGUGu -3'
miRNA:   3'- -GGCGCGU--CU---UUGGU------UCUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 133415 0.68 0.930408
Target:  5'- gCGCGCGGcuGGCCGcGGCGCG-GCGGc -3'
miRNA:   3'- gGCGCGUCu-UUGGUuCUGUGUgCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.