miRNA display CGI


Results 61 - 80 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 13855 0.66 0.98115
Target:  5'- cUCGCGCGGuacAGCCugcuAG-CGgACGCGGc -3'
miRNA:   3'- -GGCGCGUCu--UUGGu---UCuGUgUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 14004 0.66 0.983193
Target:  5'- aCGCGCcGAGAgCAcGGCAgCAgGCGGc -3'
miRNA:   3'- gGCGCGuCUUUgGUuCUGU-GUgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 14038 0.66 0.971089
Target:  5'- gCGCGCAGuuuACCGucgcGGCGCagaGCGCa- -3'
miRNA:   3'- gGCGCGUCuu-UGGUu---CUGUG---UGCGcu -5'
6500 3' -52.4 NC_001847.1 + 14081 0.69 0.91343
Target:  5'- gCCGCucGUGGAcaucGCgGAGGCGCugGCGGa -3'
miRNA:   3'- -GGCG--CGUCUu---UGgUUCUGUGugCGCU- -5'
6500 3' -52.4 NC_001847.1 + 14152 0.72 0.80642
Target:  5'- gCUGCGCAGcggcGGCCGGGGCGgcCGCGCu- -3'
miRNA:   3'- -GGCGCGUCu---UUGGUUCUGU--GUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 14328 0.7 0.894219
Target:  5'- cUCGCGguGggGCCGGGcgugguggcgGCGCcUGCGGg -3'
miRNA:   3'- -GGCGCguCuuUGGUUC----------UGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 14544 0.67 0.968064
Target:  5'- cCCGCGguGccGCCGuAGAUgccgACGCGCa- -3'
miRNA:   3'- -GGCGCguCuuUGGU-UCUG----UGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 14566 0.66 0.983193
Target:  5'- -aGCGCGGguGCUGGcGgGCGCGCGGc -3'
miRNA:   3'- ggCGCGUCuuUGGUUcUgUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 14599 0.67 0.961352
Target:  5'- -gGCGCGGAugggcGAUgGAGAagaGCACGUGGu -3'
miRNA:   3'- ggCGCGUCU-----UUGgUUCUg--UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 14715 0.66 0.973903
Target:  5'- aCGCGCGGG---CAGGAgGCgaACGCGGu -3'
miRNA:   3'- gGCGCGUCUuugGUUCUgUG--UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 14904 0.67 0.961352
Target:  5'- uCCGCGCGcAGGCCGAcugccuCGC-CGCGAu -3'
miRNA:   3'- -GGCGCGUcUUUGGUUcu----GUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 14959 0.66 0.973081
Target:  5'- cUCGCGCGGccacACCAccauccagagcaacAGGCACcgcauCGCGAg -3'
miRNA:   3'- -GGCGCGUCuu--UGGU--------------UCUGUGu----GCGCU- -5'
6500 3' -52.4 NC_001847.1 + 15013 0.69 0.91934
Target:  5'- gCCGCGguGggGCC---GCGCGagcCGCGGc -3'
miRNA:   3'- -GGCGCguCuuUGGuucUGUGU---GCGCU- -5'
6500 3' -52.4 NC_001847.1 + 15072 0.66 0.973903
Target:  5'- cCCGCGCggcucggcAGGAGCCGGGGCuaggaGCAaaggggGCGGu -3'
miRNA:   3'- -GGCGCG--------UCUUUGGUUCUG-----UGUg-----CGCU- -5'
6500 3' -52.4 NC_001847.1 + 15523 0.68 0.93756
Target:  5'- cUCG-GCGGGAGCCGcgggcugcuggcgccGGuGCGCGCGCGGc -3'
miRNA:   3'- -GGCgCGUCUUUGGU---------------UC-UGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 16327 0.73 0.739511
Target:  5'- uCCGCGCccuAGAcGACCGgcacggccuggAGGCGCugGCGGc -3'
miRNA:   3'- -GGCGCG---UCU-UUGGU-----------UCUGUGugCGCU- -5'
6500 3' -52.4 NC_001847.1 + 16691 0.68 0.945136
Target:  5'- gCUGCGCGGGcgAGCCGgcAGGCGCAgaCGAg -3'
miRNA:   3'- -GGCGCGUCU--UUGGU--UCUGUGUgcGCU- -5'
6500 3' -52.4 NC_001847.1 + 16704 0.72 0.797283
Target:  5'- gCCGCcaccaGCAGGAgccccacggcGCCGAGAcCGCAgGCGAc -3'
miRNA:   3'- -GGCG-----CGUCUU----------UGGUUCU-GUGUgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 16898 0.71 0.814502
Target:  5'- gCCGCGCAGGuuuaccagcccgGGCCGcucggcgcAGACGCcggucugcucaguGCGCGAc -3'
miRNA:   3'- -GGCGCGUCU------------UUGGU--------UCUGUG-------------UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 16980 0.66 0.971089
Target:  5'- uCCaGCGCAGGGagacgcGCCccucgGGGACGCAgCGCGc -3'
miRNA:   3'- -GG-CGCGUCUU------UGG-----UUCUGUGU-GCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.