miRNA display CGI


Results 61 - 80 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 15043 0.7 0.839796
Target:  5'- cGCCGaCGCGCGgGCGcUUUAU-CUccCGCc -3'
miRNA:   3'- aCGGC-GCGCGC-CGC-AAAUAaGAa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 15302 0.71 0.786344
Target:  5'- gGCUGCGCGCGgGCGUg-------CGCg -3'
miRNA:   3'- aCGGCGCGCGC-CGCAaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 15344 0.66 0.948866
Target:  5'- -uCCGCGCGCaGUGccg---CUUCGCu -3'
miRNA:   3'- acGGCGCGCGcCGCaaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 15548 0.66 0.964294
Target:  5'- cGCCgGUGCGCGcGCGgccg-UCgggcCGCg -3'
miRNA:   3'- aCGG-CGCGCGC-CGCaaauaAGaa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 15758 0.67 0.92955
Target:  5'- aUGCCGaCGCG-GGCGgcccgcUUUCGCc -3'
miRNA:   3'- -ACGGC-GCGCgCCGCaaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 15988 0.66 0.948866
Target:  5'- cGCCGCccCGCGGCGgccg--CggCGCc -3'
miRNA:   3'- aCGGCGc-GCGCCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 16048 0.66 0.948866
Target:  5'- cGCCGCccCGCGGCGgccg--CggCGCc -3'
miRNA:   3'- aCGGCGc-GCGCCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 16205 0.69 0.856117
Target:  5'- gGcCCGCGCcauGCGGCGUUgcagcCUcCGCg -3'
miRNA:   3'- aC-GGCGCG---CGCCGCAAauaa-GAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 16408 0.79 0.340229
Target:  5'- aGCCGCGCGgGGCGagUGUaucUCUagUCGCc -3'
miRNA:   3'- aCGGCGCGCgCCGCaaAUA---AGA--AGCG- -5'
6500 5' -53.3 NC_001847.1 + 16778 0.66 0.948866
Target:  5'- aUGCCGCGCcgcaCGGCGggg--UCaUCGg -3'
miRNA:   3'- -ACGGCGCGc---GCCGCaaauaAGaAGCg -5'
6500 5' -53.3 NC_001847.1 + 17089 0.68 0.906234
Target:  5'- aGCCGCGUaaaaGCGGCGcuccaUGUUag-CGCu -3'
miRNA:   3'- aCGGCGCG----CGCCGCaa---AUAAgaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 17286 0.66 0.967575
Target:  5'- gGCgCGUggaGCGCGGCGggUAguacUCggcggCGCg -3'
miRNA:   3'- aCG-GCG---CGCGCCGCaaAUa---AGaa---GCG- -5'
6500 5' -53.3 NC_001847.1 + 17732 0.68 0.918974
Target:  5'- aGCCGCGCGaaGCGUccaccgcgCGCa -3'
miRNA:   3'- aCGGCGCGCgcCGCAaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 17961 0.66 0.960788
Target:  5'- gUGCCGCGCuuGCGcucGCGUUcgcUCgcgUUCGCu -3'
miRNA:   3'- -ACGGCGCG--CGC---CGCAAauaAG---AAGCG- -5'
6500 5' -53.3 NC_001847.1 + 18606 0.69 0.863962
Target:  5'- cGCCGUcCGCGGCGUcgg--CgcgCGCg -3'
miRNA:   3'- aCGGCGcGCGCCGCAaauaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 18946 0.67 0.939705
Target:  5'- cGCCGC-CGCGGCGUccGggCggCGa -3'
miRNA:   3'- aCGGCGcGCGCCGCAaaUaaGaaGCg -5'
6500 5' -53.3 NC_001847.1 + 19250 0.66 0.957051
Target:  5'- cGuCCGCGUcCGGCGgaccgGUUCUggccggcggCGCg -3'
miRNA:   3'- aC-GGCGCGcGCCGCaaa--UAAGAa--------GCG- -5'
6500 5' -53.3 NC_001847.1 + 19944 0.67 0.938246
Target:  5'- gGCCGCGCGagGGCucgcccuuccacauGUggGUUUUUgGCg -3'
miRNA:   3'- aCGGCGCGCg-CCG--------------CAaaUAAGAAgCG- -5'
6500 5' -53.3 NC_001847.1 + 20283 0.73 0.655418
Target:  5'- gGCCGCacccaGCGcCGGCGUUUggUCaUUUGCu -3'
miRNA:   3'- aCGGCG-----CGC-GCCGCAAAuaAG-AAGCG- -5'
6500 5' -53.3 NC_001847.1 + 20868 0.67 0.92955
Target:  5'- cGCUGCG-GCGGCGcucUUUAUaCUggGCg -3'
miRNA:   3'- aCGGCGCgCGCCGC---AAAUAaGAagCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.