miRNA display CGI


Results 41 - 60 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 10087 0.74 0.631313
Target:  5'- cGCCGCGCGCgggagcacaagcGGCGgggaaagccgcCUUCGCg -3'
miRNA:   3'- aCGGCGCGCG------------CCGCaaauaa-----GAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 10383 0.67 0.924097
Target:  5'- cGCCGCuCGCGGCGgggccgCUUUa- -3'
miRNA:   3'- aCGGCGcGCGCCGCaaauaaGAAGcg -5'
6500 5' -53.3 NC_001847.1 + 10813 0.69 0.856117
Target:  5'- cGCCGCGCGCaGGCGcg----CcUUGCc -3'
miRNA:   3'- aCGGCGCGCG-CCGCaaauaaGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 10816 0.66 0.965633
Target:  5'- cUGCCGCGCGCuGCugcagcacCUgcgCGCg -3'
miRNA:   3'- -ACGGCGCGCGcCGcaaauaa-GAa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 10859 0.68 0.906234
Target:  5'- gGCCGagGCGCGGCGggcg--CgggCGCc -3'
miRNA:   3'- aCGGCg-CGCGCCGCaaauaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 11533 0.66 0.948866
Target:  5'- cGCCGgGUGCuGCGUUcgcgUCUggagUGCg -3'
miRNA:   3'- aCGGCgCGCGcCGCAAaua-AGAa---GCG- -5'
6500 5' -53.3 NC_001847.1 + 11576 0.66 0.960788
Target:  5'- gGCUGC-CGCGGUGccggUUGcUUCUgCGCu -3'
miRNA:   3'- aCGGCGcGCGCCGCa---AAU-AAGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 12447 0.69 0.863962
Target:  5'- cGCCggcacagcGCGCGCGGCGg--AgcCUcCGCg -3'
miRNA:   3'- aCGG--------CGCGCGCCGCaaaUaaGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 12575 0.68 0.899784
Target:  5'- cGCCGCGUacGCGGCGccc-----UCGCa -3'
miRNA:   3'- aCGGCGCG--CGCCGCaaauaagaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 12740 0.77 0.469611
Target:  5'- gGCCGgGUGCGGCccagcgccUUCUUCGCg -3'
miRNA:   3'- aCGGCgCGCGCCGcaaau---AAGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 12924 0.66 0.964294
Target:  5'- cGCCGCGgggGCGcGCGUg---UCgUCGUg -3'
miRNA:   3'- aCGGCGCg--CGC-CGCAaauaAGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 13838 1.12 0.002911
Target:  5'- uUGCCGCGCGCGGCGUUUAUUCUUCGCu -3'
miRNA:   3'- -ACGGCGCGCGCCGCAAAUAAGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 13931 0.66 0.958949
Target:  5'- gUGCCGCGcCGCGGCaGgggggccgccccgCGCa -3'
miRNA:   3'- -ACGGCGC-GCGCCG-Caaauaagaa----GCG- -5'
6500 5' -53.3 NC_001847.1 + 14151 0.69 0.871588
Target:  5'- gGCUGCGCaGCGGCGgccgGggCggcCGCg -3'
miRNA:   3'- aCGGCGCG-CGCCGCaaa-UaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 14175 0.66 0.960788
Target:  5'- gGCCGCGCuuacGCGGCGcugggUC--CGCc -3'
miRNA:   3'- aCGGCGCG----CGCCGCaaauaAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 14338 0.66 0.953079
Target:  5'- gGCCGgGCGUGGUGg-----CggCGCc -3'
miRNA:   3'- aCGGCgCGCGCCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 14372 0.71 0.767264
Target:  5'- cGCCaGCGCGCGGuCGUagAggCU-CGCc -3'
miRNA:   3'- aCGG-CGCGCGCC-GCAaaUaaGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 14458 0.66 0.964294
Target:  5'- gGCCGCGCugcuCGGCGUgcgcUCcaaCGCc -3'
miRNA:   3'- aCGGCGCGc---GCCGCAaauaAGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 14560 0.68 0.918393
Target:  5'- cGCCGCaGCGCGG-GUgcuggCgggCGCg -3'
miRNA:   3'- aCGGCG-CGCGCCgCAaauaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 14761 0.67 0.92848
Target:  5'- aGUCGCcCGCGGCGUgguag---CGCa -3'
miRNA:   3'- aCGGCGcGCGCCGCAaauaagaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.