Results 41 - 60 of 533 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6500 | 5' | -53.3 | NC_001847.1 | + | 133229 | 0.78 | 0.398128 |
Target: 5'- cGCCGCGcCGCGGCGggc--UCU-CGCa -3' miRNA: 3'- aCGGCGC-GCGCCGCaaauaAGAaGCG- -5' |
|||||||
6500 | 5' | -53.3 | NC_001847.1 | + | 64703 | 0.79 | 0.370887 |
Target: 5'- cUGCCGCGCGCGGcCGUcgacaacgCUUCGg -3' miRNA: 3'- -ACGGCGCGCGCC-GCAaauaa---GAAGCg -5' |
|||||||
6500 | 5' | -53.3 | NC_001847.1 | + | 67463 | 0.79 | 0.361004 |
Target: 5'- aGCgCGCGCGCGGCGgccgcggcgUCgUCGCa -3' miRNA: 3'- aCG-GCGCGCGCCGCaaaua----AGaAGCG- -5' |
|||||||
6500 | 5' | -53.3 | NC_001847.1 | + | 94209 | 0.79 | 0.348116 |
Target: 5'- cGCUGCGCGCGGCGgag---CU-CGCg -3' miRNA: 3'- aCGGCGCGCGCCGCaaauaaGAaGCG- -5' |
|||||||
6500 | 5' | -53.3 | NC_001847.1 | + | 121316 | 0.8 | 0.309987 |
Target: 5'- cGCCGCGCGCGGCaaacgaUCUcgcUCGCg -3' miRNA: 3'- aCGGCGCGCGCCGcaaauaAGA---AGCG- -5' |
|||||||
6500 | 5' | -53.3 | NC_001847.1 | + | 134129 | 0.76 | 0.520724 |
Target: 5'- cGCCGCGgGCGGCGgccugGUggagCGCg -3' miRNA: 3'- aCGGCGCgCGCCGCaaa--UAagaaGCG- -5' |
|||||||
6500 | 5' | -53.3 | NC_001847.1 | + | 82466 | 0.75 | 0.526766 |
Target: 5'- gGCCGCGUGCGGCGUgccgUGggacgagccCGCg -3' miRNA: 3'- aCGGCGCGCGCCGCAa---AUaagaa----GCG- -5' |
|||||||
6500 | 5' | -53.3 | NC_001847.1 | + | 28005 | 0.73 | 0.644944 |
Target: 5'- cUGCaGCGCGCGGCGUgccgcgCUUacgaGCg -3' miRNA: 3'- -ACGgCGCGCGCCGCAaauaa-GAAg---CG- -5' |
|||||||
6500 | 5' | -53.3 | NC_001847.1 | + | 10087 | 0.74 | 0.631313 |
Target: 5'- cGCCGCGCGCgggagcacaagcGGCGgggaaagccgcCUUCGCg -3' miRNA: 3'- aCGGCGCGCG------------CCGCaaauaa-----GAAGCG- -5' |
|||||||
6500 | 5' | -53.3 | NC_001847.1 | + | 124341 | 0.74 | 0.623972 |
Target: 5'- cGCCuGCGCGCGGCGuUUUAUUUa---- -3' miRNA: 3'- aCGG-CGCGCGCCGC-AAAUAAGaagcg -5' |
|||||||
6500 | 5' | -53.3 | NC_001847.1 | + | 51548 | 0.74 | 0.603026 |
Target: 5'- gGCUGCGCGCGcGCGcgUGcUCgggcUCGCg -3' miRNA: 3'- aCGGCGCGCGC-CGCaaAUaAGa---AGCG- -5' |
|||||||
6500 | 5' | -53.3 | NC_001847.1 | + | 33798 | 0.74 | 0.603026 |
Target: 5'- gGCUGCGCGCGGCGcc----CggCGCg -3' miRNA: 3'- aCGGCGCGCGCCGCaaauaaGaaGCG- -5' |
|||||||
6500 | 5' | -53.3 | NC_001847.1 | + | 69096 | 0.74 | 0.600935 |
Target: 5'- cGCCGCGCGCGGaCGggcgggccgcGUUCUcggCGUa -3' miRNA: 3'- aCGGCGCGCGCC-GCaaa-------UAAGAa--GCG- -5' |
|||||||
6500 | 5' | -53.3 | NC_001847.1 | + | 133425 | 0.74 | 0.592583 |
Target: 5'- gGCCGCgGCGCGGCGgcgg--CUgaUCGUg -3' miRNA: 3'- aCGGCG-CGCGCCGCaaauaaGA--AGCG- -5' |
|||||||
6500 | 5' | -53.3 | NC_001847.1 | + | 104326 | 0.74 | 0.592583 |
Target: 5'- aGCCGCGCGUaGGCGgcc--UCggCGCg -3' miRNA: 3'- aCGGCGCGCG-CCGCaaauaAGaaGCG- -5' |
|||||||
6500 | 5' | -53.3 | NC_001847.1 | + | 93352 | 0.74 | 0.592583 |
Target: 5'- cGuaGCGCGCGGCGUUUAgcg-UUGUg -3' miRNA: 3'- aCggCGCGCGCCGCAAAUaagaAGCG- -5' |
|||||||
6500 | 5' | -53.3 | NC_001847.1 | + | 24344 | 0.74 | 0.592583 |
Target: 5'- cGCCGCGCGCGGCc-----UUUUCGg -3' miRNA: 3'- aCGGCGCGCGCCGcaaauaAGAAGCg -5' |
|||||||
6500 | 5' | -53.3 | NC_001847.1 | + | 29503 | 0.75 | 0.58217 |
Target: 5'- gGCCGCGgGCGGCGc---UUCggcCGCa -3' miRNA: 3'- aCGGCGCgCGCCGCaaauAAGaa-GCG- -5' |
|||||||
6500 | 5' | -53.3 | NC_001847.1 | + | 45916 | 0.75 | 0.579053 |
Target: 5'- cGCCGCGUGUaGGCGUugauaaagcggcagUUGUUUUUgCGCa -3' miRNA: 3'- aCGGCGCGCG-CCGCA--------------AAUAAGAA-GCG- -5' |
|||||||
6500 | 5' | -53.3 | NC_001847.1 | + | 28748 | 0.75 | 0.53081 |
Target: 5'- cGCCGCGCGCGuGCGUgc---CgaCGCg -3' miRNA: 3'- aCGGCGCGCGC-CGCAaauaaGaaGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home