miRNA display CGI


Results 41 - 60 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 30612 0.74 0.592583
Target:  5'- gGCCGCgGCGCGGCGgcgg--CUgaUCGUg -3'
miRNA:   3'- aCGGCG-CGCGCCGCaaauaaGA--AGCG- -5'
6500 5' -53.3 NC_001847.1 + 1513 0.74 0.592583
Target:  5'- aGCCGCGCGUaGGCGgcc--UCggCGCg -3'
miRNA:   3'- aCGGCGCGCG-CCGCaaauaAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 59205 0.74 0.598845
Target:  5'- cGCCGCGUGUGGCGgcgcacggCggCGCc -3'
miRNA:   3'- aCGGCGCGCGCCGCaaauaa--GaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 38070 0.74 0.598845
Target:  5'- aGCUGCGCGCGGCGgccgc----CGCg -3'
miRNA:   3'- aCGGCGCGCGCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 69096 0.74 0.600935
Target:  5'- cGCCGCGCGCGGaCGggcgggccgcGUUCUcggCGUa -3'
miRNA:   3'- aCGGCGCGCGCC-GCaaa-------UAAGAa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 33798 0.74 0.603026
Target:  5'- gGCUGCGCGCGGCGcc----CggCGCg -3'
miRNA:   3'- aCGGCGCGCGCCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 51548 0.74 0.603026
Target:  5'- gGCUGCGCGCGcGCGcgUGcUCgggcUCGCg -3'
miRNA:   3'- aCGGCGCGCGC-CGCaaAUaAGa---AGCG- -5'
6500 5' -53.3 NC_001847.1 + 21528 0.74 0.623972
Target:  5'- cGCCuGCGCGCGGCGuUUUAUUUa---- -3'
miRNA:   3'- aCGG-CGCGCGCCGC-AAAUAAGaagcg -5'
6500 5' -53.3 NC_001847.1 + 70696 0.74 0.623972
Target:  5'- cGCCGCGgGCGGCGgcggGggCgccCGCg -3'
miRNA:   3'- aCGGCGCgCGCCGCaaa-UaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 60745 0.74 0.623972
Target:  5'- cGCgCGCGCGCGGCGg-----CcgCGCg -3'
miRNA:   3'- aCG-GCGCGCGCCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 124341 0.74 0.623972
Target:  5'- cGCCuGCGCGCGGCGuUUUAUUUa---- -3'
miRNA:   3'- aCGG-CGCGCGCCGC-AAAUAAGaagcg -5'
6500 5' -53.3 NC_001847.1 + 10087 0.74 0.631313
Target:  5'- cGCCGCGCGCgggagcacaagcGGCGgggaaagccgcCUUCGCg -3'
miRNA:   3'- aCGGCGCGCG------------CCGCaaauaa-----GAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 129955 0.74 0.634459
Target:  5'- uUGCCGCGCucGCGGCGc-UGUUCcccgaaaUCGCc -3'
miRNA:   3'- -ACGGCGCG--CGCCGCaaAUAAGa------AGCG- -5'
6500 5' -53.3 NC_001847.1 + 125577 0.74 0.635507
Target:  5'- gGCCGCGgGCGGCGggcuggacggCUgcagCGCu -3'
miRNA:   3'- aCGGCGCgCGCCGCaaauaa----GAa---GCG- -5'
6500 5' -53.3 NC_001847.1 + 28005 0.73 0.644944
Target:  5'- cUGCaGCGCGCGGCGUgccgcgCUUacgaGCg -3'
miRNA:   3'- -ACGgCGCGCGCCGCAaauaa-GAAg---CG- -5'
6500 5' -53.3 NC_001847.1 + 52249 0.73 0.655418
Target:  5'- cGCCGCGCGCcGCGgcuuggCUgcggCGCg -3'
miRNA:   3'- aCGGCGCGCGcCGCaaauaaGAa---GCG- -5'
6500 5' -53.3 NC_001847.1 + 106406 0.73 0.655418
Target:  5'- cGCaCGCGCGCGGCGacg---CUgccCGCg -3'
miRNA:   3'- aCG-GCGCGCGCCGCaaauaaGAa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 20283 0.73 0.655418
Target:  5'- gGCCGCacccaGCGcCGGCGUUUggUCaUUUGCu -3'
miRNA:   3'- aCGGCG-----CGC-GCCGCAAAuaAG-AAGCG- -5'
6500 5' -53.3 NC_001847.1 + 93307 0.73 0.655418
Target:  5'- gGCCGCGCGCGcGUGUgUAgg---CGCg -3'
miRNA:   3'- aCGGCGCGCGC-CGCAaAUaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 53970 0.73 0.662739
Target:  5'- cGCCGCgagcccuccgagcgGCGCGGCGggccagUCgUCGCu -3'
miRNA:   3'- aCGGCG--------------CGCGCCGCaaaua-AGaAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.