miRNA display CGI


Results 41 - 60 of 533 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 44450 0.66 0.962218
Target:  5'- cGCgGCGCGCGGCacgcg-----CGCg -3'
miRNA:   3'- aCGgCGCGCGCCGcaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 61259 0.66 0.962218
Target:  5'- cGCUGCGCGgGGCGccggcggaaCUgacgCGCc -3'
miRNA:   3'- aCGGCGCGCgCCGCaaauaa---GAa---GCG- -5'
6500 5' -53.3 NC_001847.1 + 75785 0.66 0.961864
Target:  5'- gGCCGCgggcucgGCGCGGCGcgcgacc-UCGCc -3'
miRNA:   3'- aCGGCG-------CGCGCCGCaaauaagaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 98621 0.66 0.961149
Target:  5'- cGCCuCGCGCaGCGUgcacaccgccgCUUCGUc -3'
miRNA:   3'- aCGGcGCGCGcCGCAaauaa------GAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 81701 0.66 0.961149
Target:  5'- cGCUGCGCGCGcuGCGgcacgcg--CGCg -3'
miRNA:   3'- aCGGCGCGCGC--CGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 123579 0.66 0.961149
Target:  5'- cGCCGCGaGCGGgGccggaccgggCUUUGCa -3'
miRNA:   3'- aCGGCGCgCGCCgCaaauaa----GAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 64170 0.66 0.960788
Target:  5'- gGCCGCuuGCGCGGaCGgggcggCgggCGCg -3'
miRNA:   3'- aCGGCG--CGCGCC-GCaaauaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 77892 0.66 0.960788
Target:  5'- aGCgCGCucuGCGCGGCGgcgGUgg--CGCa -3'
miRNA:   3'- aCG-GCG---CGCGCCGCaaaUAagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 105758 0.66 0.960788
Target:  5'- gGCCGCcuccaGCGCGGCGgccgccUCggCGg -3'
miRNA:   3'- aCGGCG-----CGCGCCGCaaaua-AGaaGCg -5'
6500 5' -53.3 NC_001847.1 + 33061 0.66 0.960788
Target:  5'- gGCCgagGCGCuGCGGCaGUacuUUCUgCGCg -3'
miRNA:   3'- aCGG---CGCG-CGCCG-CAaauAAGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 78656 0.66 0.960788
Target:  5'- gGUCGCGCGCGccuGCGUcgccggCgugCGCa -3'
miRNA:   3'- aCGGCGCGCGC---CGCAaauaa-Gaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 84648 0.66 0.960788
Target:  5'- cUGCUGCGCGCucgGGCGaugUAgcgCgcCGCu -3'
miRNA:   3'- -ACGGCGCGCG---CCGCaa-AUaa-GaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 89061 0.66 0.960788
Target:  5'- gGCCGgGCGCcuGGCGgacg-UgUUUGCc -3'
miRNA:   3'- aCGGCgCGCG--CCGCaaauaAgAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 125214 0.66 0.960788
Target:  5'- gGCCGCG-GCGaGCGUgc--UCgucCGCg -3'
miRNA:   3'- aCGGCGCgCGC-CGCAaauaAGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 72953 0.66 0.960788
Target:  5'- aGCCGCaCGCGcGCGUggaccUCggCGUg -3'
miRNA:   3'- aCGGCGcGCGC-CGCAaaua-AGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 80685 0.66 0.960788
Target:  5'- gGCUGCGCGCcGGCGgcgg--CUgcgGCu -3'
miRNA:   3'- aCGGCGCGCG-CCGCaaauaaGAag-CG- -5'
6500 5' -53.3 NC_001847.1 + 4289 0.66 0.960788
Target:  5'- aGgCGCGCGcCGGCGccUUGguacUCGCg -3'
miRNA:   3'- aCgGCGCGC-GCCGCa-AAUaagaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 79360 0.66 0.960788
Target:  5'- cUGCCGCGCGauGCGaagcUGUgcggCagCGCg -3'
miRNA:   3'- -ACGGCGCGCgcCGCaa--AUAa---GaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 14175 0.66 0.960788
Target:  5'- gGCCGCGCuuacGCGGCGcugggUC--CGCc -3'
miRNA:   3'- aCGGCGCG----CGCCGCaaauaAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 50149 0.66 0.960788
Target:  5'- gGUCGuCGC-CGGCGUgacggUCUUCuGCc -3'
miRNA:   3'- aCGGC-GCGcGCCGCAaaua-AGAAG-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.