miRNA display CGI


Results 61 - 80 of 533 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 125214 0.66 0.960788
Target:  5'- gGCCGCG-GCGaGCGUgc--UCgucCGCg -3'
miRNA:   3'- aCGGCGCgCGC-CGCAaauaAGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 77892 0.66 0.960788
Target:  5'- aGCgCGCucuGCGCGGCGgcgGUgg--CGCa -3'
miRNA:   3'- aCG-GCG---CGCGCCGCaaaUAagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 78656 0.66 0.960788
Target:  5'- gGUCGCGCGCGccuGCGUcgccggCgugCGCa -3'
miRNA:   3'- aCGGCGCGCGC---CGCAaauaa-Gaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 33061 0.66 0.960788
Target:  5'- gGCCgagGCGCuGCGGCaGUacuUUCUgCGCg -3'
miRNA:   3'- aCGG---CGCG-CGCCG-CAaauAAGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 7299 0.66 0.960425
Target:  5'- aGCCGCugGCGCGGCGccugagCggaccgacgcuauUUCGCc -3'
miRNA:   3'- aCGGCG--CGCGCCGCaaauaaG-------------AAGCG- -5'
6500 5' -53.3 NC_001847.1 + 56682 0.66 0.959692
Target:  5'- aGCUuggagacguaccugGCGCGCGGCGg-----CUUUGUc -3'
miRNA:   3'- aCGG--------------CGCGCGCCGCaaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 29533 0.66 0.959322
Target:  5'- cGCC-CGCGCGGCGcgggcgcucgaGUUCcccCGCa -3'
miRNA:   3'- aCGGcGCGCGCCGCaaa--------UAAGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 75277 0.66 0.959322
Target:  5'- gGCCGCGCGC-GCGgcccucggCgacCGCg -3'
miRNA:   3'- aCGGCGCGCGcCGCaaauaa--Gaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 13931 0.66 0.958949
Target:  5'- gUGCCGCGcCGCGGCaGgggggccgccccgCGCa -3'
miRNA:   3'- -ACGGCGC-GCGCCG-Caaauaagaa----GCG- -5'
6500 5' -53.3 NC_001847.1 + 58680 0.66 0.958574
Target:  5'- cUGCCGUGgaagcgcgucugugcCGCGGCGgaaaagUCcgCGCg -3'
miRNA:   3'- -ACGGCGC---------------GCGCCGCaaaua-AGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 90560 0.66 0.958197
Target:  5'- cGCCGCGCGCgagGGCGacgacgagcCGCc -3'
miRNA:   3'- aCGGCGCGCG---CCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 79074 0.66 0.957051
Target:  5'- aGCCGgGCGCGuGCGacgUGUgccCgugCGCc -3'
miRNA:   3'- aCGGCgCGCGC-CGCaa-AUAa--Gaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 19250 0.66 0.957051
Target:  5'- cGuCCGCGUcCGGCGgaccgGUUCUggccggcggCGCg -3'
miRNA:   3'- aC-GGCGCGcGCCGCaaa--UAAGAa--------GCG- -5'
6500 5' -53.3 NC_001847.1 + 23885 0.66 0.957051
Target:  5'- cGCaGCGCGCGcaucaGCGgcagGUUCgggCGCa -3'
miRNA:   3'- aCGgCGCGCGC-----CGCaaa-UAAGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 73820 0.66 0.957051
Target:  5'- cGCCGCGCuGCaGCGg-----CUgCGCg -3'
miRNA:   3'- aCGGCGCG-CGcCGCaaauaaGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 65774 0.66 0.957051
Target:  5'- aGCUGCGCGCcGUGUacgcUUUUUCGg -3'
miRNA:   3'- aCGGCGCGCGcCGCAaau-AAGAAGCg -5'
6500 5' -53.3 NC_001847.1 + 88465 0.66 0.957051
Target:  5'- cGaCCGCGCGCG-CGUg----CUgcUCGCc -3'
miRNA:   3'- aC-GGCGCGCGCcGCAaauaaGA--AGCG- -5'
6500 5' -53.3 NC_001847.1 + 112889 0.66 0.957051
Target:  5'- cGCCGCGCGCu-CGUcgGcUUCUUCcuGCu -3'
miRNA:   3'- aCGGCGCGCGccGCAaaU-AAGAAG--CG- -5'
6500 5' -53.3 NC_001847.1 + 104157 0.66 0.957051
Target:  5'- cGCCGCgcccuGCGCGGCca-UGUcCUUgCGCc -3'
miRNA:   3'- aCGGCG-----CGCGCCGcaaAUAaGAA-GCG- -5'
6500 5' -53.3 NC_001847.1 + 94172 0.66 0.957051
Target:  5'- cUGCUGgGCGCGGCcg-----CcUCGCg -3'
miRNA:   3'- -ACGGCgCGCGCCGcaaauaaGaAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.