Results 21 - 40 of 533 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6500 | 5' | -53.3 | NC_001847.1 | + | 96947 | 0.76 | 0.501773 |
Target: 5'- cGCCGCuaGCGGCGgcaaaguccgggacgUUGUUCU-CGCu -3' miRNA: 3'- aCGGCGcgCGCCGCa--------------AAUAAGAaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 61448 | 0.76 | 0.506732 |
Target: 5'- cGCCGgGCGCGGCGaggcgg--UCGCg -3' miRNA: 3'- aCGGCgCGCGCCGCaaauaagaAGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 3826 | 0.76 | 0.520724 |
Target: 5'- gGCCGCgaGCGUGGCGUUg----UUCGCg -3' miRNA: 3'- aCGGCG--CGCGCCGCAAauaagAAGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 31316 | 0.76 | 0.520724 |
Target: 5'- cGCCGCGgGCGGCGgccugGUggagCGCg -3' miRNA: 3'- aCGGCGCgCGCCGCaaa--UAagaaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 134129 | 0.76 | 0.520724 |
Target: 5'- cGCCGCGgGCGGCGgccugGUggagCGCg -3' miRNA: 3'- aCGGCGCgCGCCGCaaa--UAagaaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 82466 | 0.75 | 0.526766 |
Target: 5'- gGCCGCGUGCGGCGUgccgUGggacgagccCGCg -3' miRNA: 3'- aCGGCGCGCGCCGCAa---AUaagaa----GCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 55771 | 0.75 | 0.526766 |
Target: 5'- aGCCGCGCGCuGCcgcacagCUUCGCa -3' miRNA: 3'- aCGGCGCGCGcCGcaaauaaGAAGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 75240 | 0.75 | 0.53081 |
Target: 5'- cGCCGCGCGCGcGCGccgcccUCcUCGCc -3' miRNA: 3'- aCGGCGCGCGC-CGCaaaua-AGaAGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 34150 | 0.75 | 0.53081 |
Target: 5'- cUGCCGC-CGCGGCGgcaccUUCcgUCGCu -3' miRNA: 3'- -ACGGCGcGCGCCGCaaau-AAGa-AGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 28748 | 0.75 | 0.53081 |
Target: 5'- cGCCGCGCGCGuGCGUgc---CgaCGCg -3' miRNA: 3'- aCGGCGCGCGC-CGCAaauaaGaaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 70257 | 0.75 | 0.540966 |
Target: 5'- gGCgGgCGCGCGGCGUUgcucUCggCGCg -3' miRNA: 3'- aCGgC-GCGCGCCGCAAaua-AGaaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 83717 | 0.75 | 0.571795 |
Target: 5'- aUGUCGCGCGCGGgCGgcuccgUCUgCGCc -3' miRNA: 3'- -ACGGCGCGCGCC-GCaaaua-AGAaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 47415 | 0.75 | 0.576978 |
Target: 5'- gGCCGUGgGCGGCGUcugcgacgucgucggCUUCGCc -3' miRNA: 3'- aCGGCGCgCGCCGCAaauaa----------GAAGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 45916 | 0.75 | 0.579053 |
Target: 5'- cGCCGCGUGUaGGCGUugauaaagcggcagUUGUUUUUgCGCa -3' miRNA: 3'- aCGGCGCGCG-CCGCA--------------AAUAAGAA-GCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 105683 | 0.75 | 0.58217 |
Target: 5'- gGCCGCGgGCGGCGc---UUCggcCGCg -3' miRNA: 3'- aCGGCGCgCGCCGCaaauAAGaa-GCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 29503 | 0.75 | 0.58217 |
Target: 5'- gGCCGCGgGCGGCGc---UUCggcCGCa -3' miRNA: 3'- aCGGCGCgCGCCGCaaauAAGaa-GCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 30612 | 0.74 | 0.592583 |
Target: 5'- gGCCGCgGCGCGGCGgcgg--CUgaUCGUg -3' miRNA: 3'- aCGGCG-CGCGCCGCaaauaaGA--AGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 24344 | 0.74 | 0.592583 |
Target: 5'- cGCCGCGCGCGGCc-----UUUUCGg -3' miRNA: 3'- aCGGCGCGCGCCGcaaauaAGAAGCg -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 104326 | 0.74 | 0.592583 |
Target: 5'- aGCCGCGCGUaGGCGgcc--UCggCGCg -3' miRNA: 3'- aCGGCGCGCG-CCGCaaauaAGaaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 133425 | 0.74 | 0.592583 |
Target: 5'- gGCCGCgGCGCGGCGgcgg--CUgaUCGUg -3' miRNA: 3'- aCGGCG-CGCGCCGCaaauaaGA--AGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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