miRNA display CGI


Results 21 - 40 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 28236 0.66 0.953079
Target:  5'- aUGCaGCGCGUGGUGguggagUGggCcUCGCu -3'
miRNA:   3'- -ACGgCGCGCGCCGCaa----AUaaGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 77038 0.66 0.950155
Target:  5'- cGCCGCGCcgcagaaguaguaGCGGCGcggcacccgCUgcggCGCg -3'
miRNA:   3'- aCGGCGCG-------------CGCCGCaaauaa---GAa---GCG- -5'
6500 5' -53.3 NC_001847.1 + 31103 0.66 0.948866
Target:  5'- gGCCGggcaGCGCGGUGgcaugcCUUCGg -3'
miRNA:   3'- aCGGCg---CGCGCCGCaaauaaGAAGCg -5'
6500 5' -53.3 NC_001847.1 + 79074 0.66 0.957051
Target:  5'- aGCCGgGCGCGuGCGacgUGUgccCgugCGCc -3'
miRNA:   3'- aCGGCgCGCGC-CGCaa-AUAa--Gaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 23885 0.66 0.957051
Target:  5'- cGCaGCGCGCGcaucaGCGgcagGUUCgggCGCa -3'
miRNA:   3'- aCGgCGCGCGC-----CGCaaa-UAAGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 15344 0.66 0.948866
Target:  5'- -uCCGCGCGCaGUGccg---CUUCGCu -3'
miRNA:   3'- acGGCGCGCGcCGCaaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 65774 0.66 0.957051
Target:  5'- aGCUGCGCGCcGUGUacgcUUUUUCGg -3'
miRNA:   3'- aCGGCGCGCGcCGCAaau-AAGAAGCg -5'
6500 5' -53.3 NC_001847.1 + 16048 0.66 0.948866
Target:  5'- cGCCGCccCGCGGCGgccg--CggCGCc -3'
miRNA:   3'- aCGGCGc-GCGCCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 59312 0.66 0.948866
Target:  5'- gUGCCaGgGCGCGGCGccgg--CggCGCc -3'
miRNA:   3'- -ACGG-CgCGCGCCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 90560 0.66 0.958197
Target:  5'- cGCCGCGCGCgagGGCGacgacgagcCGCc -3'
miRNA:   3'- aCGGCGCGCG---CCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 33124 0.66 0.947994
Target:  5'- cGaCCGCG-GCGGCGgcgagcgCUUcCGCg -3'
miRNA:   3'- aC-GGCGCgCGCCGCaaauaa-GAA-GCG- -5'
6500 5' -53.3 NC_001847.1 + 105815 0.66 0.948431
Target:  5'- aGCCGCGCGCGcuccaccGCGUcgcgggCcgCGCc -3'
miRNA:   3'- aCGGCGCGCGC-------CGCAaauaa-GaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 104157 0.66 0.957051
Target:  5'- cGCCGCgcccuGCGCGGCca-UGUcCUUgCGCc -3'
miRNA:   3'- aCGGCG-----CGCGCCGcaaAUAaGAA-GCG- -5'
6500 5' -53.3 NC_001847.1 + 94172 0.66 0.957051
Target:  5'- cUGCUGgGCGCGGCcg-----CcUCGCg -3'
miRNA:   3'- -ACGGCgCGCGCCGcaaauaaGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 131426 0.66 0.951002
Target:  5'- gGCCGCGCGCuacgcGGCGgccgcggggccCGCg -3'
miRNA:   3'- aCGGCGCGCG-----CCGCaaauaagaa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 36447 0.66 0.953079
Target:  5'- cGgCGCGCGCGGCGcgg---CUgugugaGCg -3'
miRNA:   3'- aCgGCGCGCGCCGCaaauaaGAag----CG- -5'
6500 5' -53.3 NC_001847.1 + 55165 0.66 0.953079
Target:  5'- cGCCGCGCaGCGGC---------UCGCc -3'
miRNA:   3'- aCGGCGCG-CGCCGcaaauaagaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 112889 0.66 0.957051
Target:  5'- cGCCGCGCGCu-CGUcgGcUUCUUCcuGCu -3'
miRNA:   3'- aCGGCGCGCGccGCAaaU-AAGAAG--CG- -5'
6500 5' -53.3 NC_001847.1 + 104211 0.66 0.956665
Target:  5'- cUGCCGguacuCGCGCGGCGgcacgggcacCGCg -3'
miRNA:   3'- -ACGGC-----GCGCGCCGCaaauaagaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 4201 0.66 0.95184
Target:  5'- gGCCGCGCGCaGGCagccaaagccCUgCGCg -3'
miRNA:   3'- aCGGCGCGCG-CCGcaaauaa---GAaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.