miRNA display CGI


Results 21 - 40 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 3544 0.69 0.878988
Target:  5'- gGCCGCgaGCGCGGCGg-----CggCGUa -3'
miRNA:   3'- aCGGCG--CGCGCCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 3724 0.67 0.934753
Target:  5'- cGCCGCGUaGCGcGCGgccg--CcUCGCg -3'
miRNA:   3'- aCGGCGCG-CGC-CGCaaauaaGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 3826 0.76 0.520724
Target:  5'- gGCCGCgaGCGUGGCGUUg----UUCGCg -3'
miRNA:   3'- aCGGCG--CGCGCCGCAAauaagAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 3893 0.68 0.909986
Target:  5'- cGCgGCGcCGCGGCGUagccag--CGCg -3'
miRNA:   3'- aCGgCGC-GCGCCGCAaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 3903 0.68 0.906234
Target:  5'- cGuuGCGCGCGGUGgcg---CggaCGCa -3'
miRNA:   3'- aCggCGCGCGCCGCaaauaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 4201 0.66 0.95184
Target:  5'- gGCCGCGCGCaGGCagccaaagccCUgCGCg -3'
miRNA:   3'- aCGGCGCGCG-CCGcaaauaa---GAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 4289 0.66 0.960788
Target:  5'- aGgCGCGCGcCGGCGccUUGguacUCGCg -3'
miRNA:   3'- aCgGCGCGC-GCCGCa-AAUaagaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 4465 0.67 0.92955
Target:  5'- gGCCGCGCGguugaCGGCGgc----CUUgCGCu -3'
miRNA:   3'- aCGGCGCGC-----GCCGCaaauaaGAA-GCG- -5'
6500 5' -53.3 NC_001847.1 + 4590 0.69 0.867803
Target:  5'- cGCgGUGCGCGGCGacgaaggcggccacgUCgUCGCa -3'
miRNA:   3'- aCGgCGCGCGCCGCaaaua----------AGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 4977 0.66 0.948866
Target:  5'- cGCC-CGCGgGGuCGUgacgUCcUCGCa -3'
miRNA:   3'- aCGGcGCGCgCC-GCAaauaAGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 4997 0.7 0.804842
Target:  5'- gGCCGCggcaaaGCGCGGCGgcgg--CggCGCg -3'
miRNA:   3'- aCGGCG------CGCGCCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 5235 0.66 0.964294
Target:  5'- gGgCGCGCGCGGCaaaggGUUUgccUGCg -3'
miRNA:   3'- aCgGCGCGCGCCGcaaa-UAAGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 5675 0.73 0.686687
Target:  5'- cGUCGCGCGCGGCGg-----CggcCGCc -3'
miRNA:   3'- aCGGCGCGCGCCGCaaauaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 5738 0.66 0.964294
Target:  5'- cUGCC-CGCGgGGCG---GUUCgcCGCc -3'
miRNA:   3'- -ACGGcGCGCgCCGCaaaUAAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 5883 0.71 0.764357
Target:  5'- cGCUGCGCGCagGGCGgccgcgccgUCGCa -3'
miRNA:   3'- aCGGCGCGCG--CCGCaaauaaga-AGCG- -5'
6500 5' -53.3 NC_001847.1 + 5961 0.68 0.897136
Target:  5'- cGUaCGCGCGCGcGCGUaagccucggCUUUGCg -3'
miRNA:   3'- aCG-GCGCGCGC-CGCAaauaa----GAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 7299 0.66 0.960425
Target:  5'- aGCCGCugGCGCGGCGccugagCggaccgacgcuauUUCGCc -3'
miRNA:   3'- aCGGCG--CGCGCCGCaaauaaG-------------AAGCG- -5'
6500 5' -53.3 NC_001847.1 + 7898 0.7 0.822683
Target:  5'- aGCCGCGCGgGGCGcgcgg-CggcCGCc -3'
miRNA:   3'- aCGGCGCGCgCCGCaaauaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 8780 0.66 0.967575
Target:  5'- cGCCGgGCGCGGCcgc----CUUCa- -3'
miRNA:   3'- aCGGCgCGCGCCGcaaauaaGAAGcg -5'
6500 5' -53.3 NC_001847.1 + 10076 0.66 0.957051
Target:  5'- cGCCGCGCGCu-CGUcgGcUUCUUCcuGCu -3'
miRNA:   3'- aCGGCGCGCGccGCAaaU-AAGAAG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.