miRNA display CGI


Results 21 - 40 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 130763 0.69 0.878988
Target:  5'- gGCCGCgGCGCGcGCGc----UCgcggUCGCg -3'
miRNA:   3'- aCGGCG-CGCGC-CGCaaauaAGa---AGCG- -5'
6500 5' -53.3 NC_001847.1 + 130231 0.73 0.686687
Target:  5'- uUGCCGCcgGCGCGGuCGgug--UCgUUCGCa -3'
miRNA:   3'- -ACGGCG--CGCGCC-GCaaauaAG-AAGCG- -5'
6500 5' -53.3 NC_001847.1 + 129955 0.74 0.634459
Target:  5'- uUGCCGCGCucGCGGCGc-UGUUCcccgaaaUCGCc -3'
miRNA:   3'- -ACGGCGCG--CGCCGCaaAUAAGa------AGCG- -5'
6500 5' -53.3 NC_001847.1 + 129480 0.67 0.944409
Target:  5'- cGCCGCGCGCGaCGgcg------CGCa -3'
miRNA:   3'- aCGGCGCGCGCcGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 127070 0.69 0.871588
Target:  5'- cGCCGCG-GCGGUGccccccUCUgcgCGCg -3'
miRNA:   3'- aCGGCGCgCGCCGCaaaua-AGAa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 126918 0.72 0.727669
Target:  5'- gGCCaGCGCGUGGCGcagcugCUUCuGCu -3'
miRNA:   3'- aCGG-CGCGCGCCGCaaauaaGAAG-CG- -5'
6500 5' -53.3 NC_001847.1 + 126375 0.72 0.741718
Target:  5'- gGCCGCGCcCGGCGgaUAUgccauuauaaugUCGCa -3'
miRNA:   3'- aCGGCGCGcGCCGCaaAUAaga---------AGCG- -5'
6500 5' -53.3 NC_001847.1 + 125577 0.74 0.635507
Target:  5'- gGCCGCGgGCGGCGggcuggacggCUgcagCGCu -3'
miRNA:   3'- aCGGCGCgCGCCGCaaauaa----GAa---GCG- -5'
6500 5' -53.3 NC_001847.1 + 125521 0.69 0.863962
Target:  5'- gGCCG-GCGCGGCGg-----CgggCGCa -3'
miRNA:   3'- aCGGCgCGCGCCGCaaauaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 125214 0.66 0.960788
Target:  5'- gGCCGCG-GCGaGCGUgc--UCgucCGCg -3'
miRNA:   3'- aCGGCGCgCGC-CGCAaauaAGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 125073 0.68 0.906234
Target:  5'- aGCCgacgaGCGCGCGGCGcag---CgcgCGCg -3'
miRNA:   3'- aCGG-----CGCGCGCCGCaaauaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 125068 0.73 0.665873
Target:  5'- -cCCGCGCGCGGCGgggcg-CUgggcccgCGCg -3'
miRNA:   3'- acGGCGCGCGCCGCaaauaaGAa------GCG- -5'
6500 5' -53.3 NC_001847.1 + 124864 0.66 0.967575
Target:  5'- gGCgaGCGCGCGGCccgcgGUUUUUaUGCg -3'
miRNA:   3'- aCGg-CGCGCGCCGcaaa-UAAGAA-GCG- -5'
6500 5' -53.3 NC_001847.1 + 124712 0.68 0.912438
Target:  5'- aGCCGgGCGCGGgGgcgg--CagCGCg -3'
miRNA:   3'- aCGGCgCGCGCCgCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 124558 0.67 0.939705
Target:  5'- cUGCCGagagcaGCGCGGCGUcugcgUAcaggUCUgCGUu -3'
miRNA:   3'- -ACGGCg-----CGCGCCGCAa----AUa---AGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 124341 0.74 0.623972
Target:  5'- cGCCuGCGCGCGGCGuUUUAUUUa---- -3'
miRNA:   3'- aCGG-CGCGCGCCGC-AAAUAAGaagcg -5'
6500 5' -53.3 NC_001847.1 + 123828 0.66 0.953079
Target:  5'- aGCCGCcCGCcggccucggcgGGCGcgcccaUCUUCGCg -3'
miRNA:   3'- aCGGCGcGCG-----------CCGCaaaua-AGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 123702 0.69 0.845602
Target:  5'- aGCCGCugGCGCGGgGUcgcacggcagcaCUUCGCu -3'
miRNA:   3'- aCGGCG--CGCGCCgCAaauaa-------GAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 123579 0.66 0.961149
Target:  5'- cGCCGCGaGCGGgGccggaccgggCUUUGCa -3'
miRNA:   3'- aCGGCGCgCGCCgCaaauaa----GAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 122700 0.66 0.953079
Target:  5'- cGCCGCGCGCGcUGUgc---CggCGCc -3'
miRNA:   3'- aCGGCGCGCGCcGCAaauaaGaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.