miRNA display CGI


Results 1 - 20 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 134236 0.67 0.939705
Target:  5'- cGCCgGCGgGCGGCGgccgg-CggcCGCg -3'
miRNA:   3'- aCGG-CGCgCGCCGCaaauaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 134129 0.76 0.520724
Target:  5'- cGCCGCGgGCGGCGgccugGUggagCGCg -3'
miRNA:   3'- aCGGCGCgCGCCGCaaa--UAagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 134039 0.66 0.956276
Target:  5'- gGCCGCG-GCGGCGccgcccgCggcCGCg -3'
miRNA:   3'- aCGGCGCgCGCCGCaaauaa-Gaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 134005 0.68 0.906234
Target:  5'- aGCCGCGCGCcgaGGCGccgccgCUggUGCu -3'
miRNA:   3'- aCGGCGCGCG---CCGCaaauaaGAa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 133967 0.72 0.707312
Target:  5'- gGCCGCG-GCGGUGgcc-UUCUgCGCg -3'
miRNA:   3'- aCGGCGCgCGCCGCaaauAAGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 133584 0.7 0.812956
Target:  5'- cGCCGUGCuggccucGCGGCGcg---UCUUCGg -3'
miRNA:   3'- aCGGCGCG-------CGCCGCaaauaAGAAGCg -5'
6500 5' -53.3 NC_001847.1 + 133550 0.7 0.839796
Target:  5'- cGCCGCGCGCuGGCccgag--CggCGCg -3'
miRNA:   3'- aCGGCGCGCG-CCGcaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 133478 0.68 0.898465
Target:  5'- gGCCGCGCGaCGGCccggccgUCgggcaggCGCa -3'
miRNA:   3'- aCGGCGCGC-GCCGcaaaua-AGaa-----GCG- -5'
6500 5' -53.3 NC_001847.1 + 133425 0.74 0.592583
Target:  5'- gGCCGCgGCGCGGCGgcgg--CUgaUCGUg -3'
miRNA:   3'- aCGGCG-CGCGCCGCaaauaaGA--AGCG- -5'
6500 5' -53.3 NC_001847.1 + 133391 0.66 0.948866
Target:  5'- -uCCGCgGCGCGGUGgagUAccUCUgcgCGCg -3'
miRNA:   3'- acGGCG-CGCGCCGCaa-AUa-AGAa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 133229 0.78 0.398128
Target:  5'- cGCCGCGcCGCGGCGggc--UCU-CGCa -3'
miRNA:   3'- aCGGCGC-GCGCCGCaaauaAGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 133217 0.69 0.878988
Target:  5'- cGCCGCGCGCcGGCuaag---CcUCGCc -3'
miRNA:   3'- aCGGCGCGCG-CCGcaaauaaGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 133097 0.69 0.878988
Target:  5'- gGCgGCGCGUGGCcUggAUg--UCGCa -3'
miRNA:   3'- aCGgCGCGCGCCGcAaaUAagaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 132803 0.67 0.944866
Target:  5'- gGCCG-GCGCGGCGggagccgccgCUgccCGCc -3'
miRNA:   3'- aCGGCgCGCGCCGCaaauaa----GAa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 132220 0.67 0.944409
Target:  5'- gGCCGCGCugGCGGCGcggaccgUGgccccgCU-CGCg -3'
miRNA:   3'- aCGGCGCG--CGCCGCaa-----AUaa----GAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 132186 0.66 0.948866
Target:  5'- cGCUGCGCGCcgaGGCGgccg--CcgCGCu -3'
miRNA:   3'- aCGGCGCGCG---CCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 131926 0.68 0.906234
Target:  5'- gGCgGCGCGCGaGCGg-----CUgCGCg -3'
miRNA:   3'- aCGgCGCGCGC-CGCaaauaaGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 131426 0.66 0.951002
Target:  5'- gGCCGCGCGCuacgcGGCGgccgcggggccCGCg -3'
miRNA:   3'- aCGGCGCGCG-----CCGCaaauaagaa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 131415 0.67 0.924097
Target:  5'- gGCCGCGUGCGcGcCGUggccggCgcgCGCg -3'
miRNA:   3'- aCGGCGCGCGC-C-GCAaauaa-Gaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 130951 0.68 0.892408
Target:  5'- cUGCCuGCGCGCGGCccacgggcg-CGCg -3'
miRNA:   3'- -ACGG-CGCGCGCCGcaaauaagaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.