Results 1 - 20 of 533 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6500 | 5' | -53.3 | NC_001847.1 | + | 13838 | 1.12 | 0.002911 |
Target: 5'- uUGCCGCGCGCGGCGUUUAUUCUUCGCu -3' miRNA: 3'- -ACGGCGCGCGCCGCAAAUAAGAAGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 69362 | 0.83 | 0.225964 |
Target: 5'- cUGgCGCGCGCGGCGg----UCUUUGCg -3' miRNA: 3'- -ACgGCGCGCGCCGCaaauaAGAAGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 110810 | 0.82 | 0.231676 |
Target: 5'- gGCCGCGCGCGGCGUgg------CGCg -3' miRNA: 3'- aCGGCGCGCGCCGCAaauaagaaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 121316 | 0.8 | 0.309987 |
Target: 5'- cGCCGCGCGCGGCaaacgaUCUcgcUCGCg -3' miRNA: 3'- aCGGCGCGCGCCGcaaauaAGA---AGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 16408 | 0.79 | 0.340229 |
Target: 5'- aGCCGCGCGgGGCGagUGUaucUCUagUCGCc -3' miRNA: 3'- aCGGCGCGCgCCGCaaAUA---AGA--AGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 94209 | 0.79 | 0.348116 |
Target: 5'- cGCUGCGCGCGGCGgag---CU-CGCg -3' miRNA: 3'- aCGGCGCGCGCCGCaaauaaGAaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 67463 | 0.79 | 0.361004 |
Target: 5'- aGCgCGCGCGCGGCGgccgcggcgUCgUCGCa -3' miRNA: 3'- aCG-GCGCGCGCCGCaaaua----AGaAGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 64703 | 0.79 | 0.370887 |
Target: 5'- cUGCCGCGCGCGGcCGUcgacaacgCUUCGg -3' miRNA: 3'- -ACGGCGCGCGCC-GCAaauaa---GAAGCg -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 100210 | 0.78 | 0.3852 |
Target: 5'- aUGCCGCGCagcugcgccagcgGCGGCGggacaucgaUCUUCGCg -3' miRNA: 3'- -ACGGCGCG-------------CGCCGCaaaua----AGAAGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 133229 | 0.78 | 0.398128 |
Target: 5'- cGCCGCGcCGCGGCGggc--UCU-CGCa -3' miRNA: 3'- aCGGCGC-GCGCCGCaaauaAGAaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 30416 | 0.78 | 0.398128 |
Target: 5'- cGCCGCGcCGCGGCGggc--UCU-CGCa -3' miRNA: 3'- aCGGCGC-GCGCCGCaaauaAGAaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 12740 | 0.77 | 0.469611 |
Target: 5'- gGCCGgGUGCGGCccagcgccUUCUUCGCg -3' miRNA: 3'- aCGGCgCGCGCCGcaaau---AAGAAGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 32190 | 0.77 | 0.471531 |
Target: 5'- gGCgCGCGCGCGGCGgagGUUac-CGCg -3' miRNA: 3'- aCG-GCGCGCGCCGCaaaUAAgaaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 89966 | 0.76 | 0.481188 |
Target: 5'- cUGCCaGCGCGCGGCGgaagcgGUgCUgCGCg -3' miRNA: 3'- -ACGG-CGCGCGCCGCaaa---UAaGAaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 117407 | 0.76 | 0.481188 |
Target: 5'- cGgUGCGCGCGGUGgacg--CUUCGCg -3' miRNA: 3'- aCgGCGCGCGCCGCaaauaaGAAGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 2366 | 0.76 | 0.490941 |
Target: 5'- gGCCGCGUcgGCGGCGgcggcUUUUCGCc -3' miRNA: 3'- aCGGCGCG--CGCCGCaaauaAGAAGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 105179 | 0.76 | 0.490941 |
Target: 5'- gGCCGCGUcgGCGGCGgcggcUUUUCGCc -3' miRNA: 3'- aCGGCGCG--CGCCGCaaauaAGAAGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 43902 | 0.76 | 0.497822 |
Target: 5'- cGCCGCGUGCGGCugcaggcggaccccGaagUGUUgUUCGCa -3' miRNA: 3'- aCGGCGCGCGCCG--------------Caa-AUAAgAAGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 80952 | 0.76 | 0.500784 |
Target: 5'- cGCCGCuuuuuGCGCGGCGacu-UUCUgcgCGCg -3' miRNA: 3'- aCGGCG-----CGCGCCGCaaauAAGAa--GCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 45186 | 0.76 | 0.500784 |
Target: 5'- cGCCGCGCGCuGGCag-UcgUCU-CGCa -3' miRNA: 3'- aCGGCGCGCG-CCGcaaAuaAGAaGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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