miRNA display CGI


Results 1 - 20 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 994 0.68 0.909986
Target:  5'- cGCCGCG-GCGGCGgcacg----CGCu -3'
miRNA:   3'- aCGGCGCgCGCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 1104 0.69 0.884742
Target:  5'- gGCCGCGgGCGGCGccgc-----CGCg -3'
miRNA:   3'- aCGGCGCgCGCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 1161 0.7 0.822683
Target:  5'- aUGCCGCGCGCgcucccagccccGGCGccUUAU-CU-CGCu -3'
miRNA:   3'- -ACGGCGCGCG------------CCGCa-AAUAaGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 1344 0.66 0.957051
Target:  5'- cGCCGCgcccuGCGCGGCca-UGUcCUUgCGCc -3'
miRNA:   3'- aCGGCG-----CGCGCCGcaaAUAaGAA-GCG- -5'
6500 5' -53.3 NC_001847.1 + 1398 0.66 0.956665
Target:  5'- cUGCCGguacuCGCGCGGCGgcacgggcacCGCg -3'
miRNA:   3'- -ACGGC-----GCGCGCCGCaaauaagaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 1513 0.74 0.592583
Target:  5'- aGCCGCGCGUaGGCGgcc--UCggCGCg -3'
miRNA:   3'- aCGGCGCGCG-CCGCaaauaAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 1604 0.72 0.727669
Target:  5'- gGCCaGCGCGCGGCGcacug-CgcCGCg -3'
miRNA:   3'- aCGG-CGCGCGCCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 1676 0.69 0.863962
Target:  5'- gGCCGuCGCGCGGCca--GUUC-UCGg -3'
miRNA:   3'- aCGGC-GCGCGCCGcaaaUAAGaAGCg -5'
6500 5' -53.3 NC_001847.1 + 1729 0.68 0.92013
Target:  5'- cGCCGCGcCGCGGCcagccgcg--CGCa -3'
miRNA:   3'- aCGGCGC-GCGCCGcaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 1925 0.73 0.665873
Target:  5'- cGCCGCgGCGCGGCGgccacUCgggcCGCc -3'
miRNA:   3'- aCGGCG-CGCGCCGCaaauaAGaa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 1937 0.67 0.92955
Target:  5'- aGCCgGCGCGCGGCGcagagcUCcUCcaGCg -3'
miRNA:   3'- aCGG-CGCGCGCCGCaaaua-AGaAG--CG- -5'
6500 5' -53.3 NC_001847.1 + 2098 0.67 0.946221
Target:  5'- gGCC-CGCGCGGCGgcgggc---CGCg -3'
miRNA:   3'- aCGGcGCGCGCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 2184 0.69 0.886157
Target:  5'- cGCCGCcuGgGCGGCGUg----CgggCGCa -3'
miRNA:   3'- aCGGCG--CgCGCCGCAaauaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 2366 0.76 0.490941
Target:  5'- gGCCGCGUcgGCGGCGgcggcUUUUCGCc -3'
miRNA:   3'- aCGGCGCG--CGCCGCaaauaAGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 2537 0.67 0.944409
Target:  5'- gGCCGCGgGaccgcugcucucCGGCGggcugUCUUCGg -3'
miRNA:   3'- aCGGCGCgC------------GCCGCaaauaAGAAGCg -5'
6500 5' -53.3 NC_001847.1 + 2648 0.71 0.767264
Target:  5'- cGCCGCuuGCGGCGc-----CUUCGCc -3'
miRNA:   3'- aCGGCGcgCGCCGCaaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 2945 0.73 0.686687
Target:  5'- gGCCGCcuccaGCGCGGCGgccgccUCggCGCg -3'
miRNA:   3'- aCGGCG-----CGCGCCGCaaaua-AGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 3002 0.66 0.948431
Target:  5'- aGCCGCGCGCGcuccaccGCGUcgcgggCcgCGCc -3'
miRNA:   3'- aCGGCGCGCGC-------CGCAaauaa-GaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 3153 0.66 0.948866
Target:  5'- cGCCgGCgGCGCGGCGggccgcCUccagcgccUCGCg -3'
miRNA:   3'- aCGG-CG-CGCGCCGCaaauaaGA--------AGCG- -5'
6500 5' -53.3 NC_001847.1 + 3274 0.69 0.881163
Target:  5'- cGCCGCGCGgcCGGCGagcacggcgCGCa -3'
miRNA:   3'- aCGGCGCGC--GCCGCaaauaagaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.