miRNA display CGI


Results 1 - 20 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 93352 0.74 0.592583
Target:  5'- cGuaGCGCGCGGCGUUUAgcg-UUGUg -3'
miRNA:   3'- aCggCGCGCGCCGCAAAUaagaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 80952 0.76 0.500784
Target:  5'- cGCCGCuuuuuGCGCGGCGacu-UUCUgcgCGCg -3'
miRNA:   3'- aCGGCG-----CGCGCCGCaaauAAGAa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 3826 0.76 0.520724
Target:  5'- gGCCGCgaGCGUGGCGUUg----UUCGCg -3'
miRNA:   3'- aCGGCG--CGCGCCGCAAauaagAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 134129 0.76 0.520724
Target:  5'- cGCCGCGgGCGGCGgccugGUggagCGCg -3'
miRNA:   3'- aCGGCGCgCGCCGCaaa--UAagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 82466 0.75 0.526766
Target:  5'- gGCCGCGUGCGGCGUgccgUGggacgagccCGCg -3'
miRNA:   3'- aCGGCGCGCGCCGCAa---AUaagaa----GCG- -5'
6500 5' -53.3 NC_001847.1 + 28748 0.75 0.53081
Target:  5'- cGCCGCGCGCGuGCGUgc---CgaCGCg -3'
miRNA:   3'- aCGGCGCGCGC-CGCAaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 45916 0.75 0.579053
Target:  5'- cGCCGCGUGUaGGCGUugauaaagcggcagUUGUUUUUgCGCa -3'
miRNA:   3'- aCGGCGCGCG-CCGCA--------------AAUAAGAA-GCG- -5'
6500 5' -53.3 NC_001847.1 + 29503 0.75 0.58217
Target:  5'- gGCCGCGgGCGGCGc---UUCggcCGCa -3'
miRNA:   3'- aCGGCGCgCGCCGCaaauAAGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 24344 0.74 0.592583
Target:  5'- cGCCGCGCGCGGCc-----UUUUCGg -3'
miRNA:   3'- aCGGCGCGCGCCGcaaauaAGAAGCg -5'
6500 5' -53.3 NC_001847.1 + 43902 0.76 0.497822
Target:  5'- cGCCGCGUGCGGCugcaggcggaccccGaagUGUUgUUCGCa -3'
miRNA:   3'- aCGGCGCGCGCCG--------------Caa-AUAAgAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 105179 0.76 0.490941
Target:  5'- gGCCGCGUcgGCGGCGgcggcUUUUCGCc -3'
miRNA:   3'- aCGGCGCG--CGCCGCaaauaAGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 117407 0.76 0.481188
Target:  5'- cGgUGCGCGCGGUGgacg--CUUCGCg -3'
miRNA:   3'- aCgGCGCGCGCCGCaaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 121316 0.8 0.309987
Target:  5'- cGCCGCGCGCGGCaaacgaUCUcgcUCGCg -3'
miRNA:   3'- aCGGCGCGCGCCGcaaauaAGA---AGCG- -5'
6500 5' -53.3 NC_001847.1 + 94209 0.79 0.348116
Target:  5'- cGCUGCGCGCGGCGgag---CU-CGCg -3'
miRNA:   3'- aCGGCGCGCGCCGCaaauaaGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 67463 0.79 0.361004
Target:  5'- aGCgCGCGCGCGGCGgccgcggcgUCgUCGCa -3'
miRNA:   3'- aCG-GCGCGCGCCGCaaaua----AGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 64703 0.79 0.370887
Target:  5'- cUGCCGCGCGCGGcCGUcgacaacgCUUCGg -3'
miRNA:   3'- -ACGGCGCGCGCC-GCAaauaa---GAAGCg -5'
6500 5' -53.3 NC_001847.1 + 133229 0.78 0.398128
Target:  5'- cGCCGCGcCGCGGCGggc--UCU-CGCa -3'
miRNA:   3'- aCGGCGC-GCGCCGCaaauaAGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 12740 0.77 0.469611
Target:  5'- gGCCGgGUGCGGCccagcgccUUCUUCGCg -3'
miRNA:   3'- aCGGCgCGCGCCGcaaau---AAGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 32190 0.77 0.471531
Target:  5'- gGCgCGCGCGCGGCGgagGUUac-CGCg -3'
miRNA:   3'- aCG-GCGCGCGCCGCaaaUAAgaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 89966 0.76 0.481188
Target:  5'- cUGCCaGCGCGCGGCGgaagcgGUgCUgCGCg -3'
miRNA:   3'- -ACGG-CGCGCGCCGCaaa---UAaGAaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.