miRNA display CGI


Results 1 - 20 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 122010 0.66 0.96789
Target:  5'- gGCCGCggcaggcgGCGCGGCGccgcccg--CGCg -3'
miRNA:   3'- aCGGCG--------CGCGCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 5738 0.66 0.964294
Target:  5'- cUGCC-CGCGgGGCG---GUUCgcCGCc -3'
miRNA:   3'- -ACGGcGCGCgCCGCaaaUAAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 61259 0.66 0.962218
Target:  5'- cGCUGCGCGgGGCGccggcggaaCUgacgCGCc -3'
miRNA:   3'- aCGGCGCGCgCCGCaaauaa---GAa---GCG- -5'
6500 5' -53.3 NC_001847.1 + 13838 1.12 0.002911
Target:  5'- uUGCCGCGCGCGGCGUUUAUUCUUCGCu -3'
miRNA:   3'- -ACGGCGCGCGCCGCAAAUAAGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 70754 0.66 0.967575
Target:  5'- cGCCGCGCagaGCGgGCGccgcauuuuUUUGUcuggcggcucgCUUCGCg -3'
miRNA:   3'- aCGGCGCG---CGC-CGC---------AAAUAa----------GAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 39067 0.66 0.967575
Target:  5'- gGCuCGCGCaGCGG-GUUgagGUUCaUUCGg -3'
miRNA:   3'- aCG-GCGCG-CGCCgCAAa--UAAG-AAGCg -5'
6500 5' -53.3 NC_001847.1 + 73070 0.66 0.967575
Target:  5'- cGCCGCGgGCG-CGgaag-UCgaCGCg -3'
miRNA:   3'- aCGGCGCgCGCcGCaaauaAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 62156 0.66 0.967575
Target:  5'- gGCCGCG-GCGGCGUaggc----CGCc -3'
miRNA:   3'- aCGGCGCgCGCCGCAaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 39113 0.66 0.964968
Target:  5'- cGCUGCGCGacagggcuacguacaCGGCGUUgagccgcagguUUCcgCGCg -3'
miRNA:   3'- aCGGCGCGC---------------GCCGCAAau---------AAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 82075 0.66 0.964294
Target:  5'- aGCCGgGCuCGGCGUcUGggCcaagCGCg -3'
miRNA:   3'- aCGGCgCGcGCCGCAaAUaaGaa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 12924 0.66 0.964294
Target:  5'- cGCCGCGgggGCGcGCGUg---UCgUCGUg -3'
miRNA:   3'- aCGGCGCg--CGC-CGCAaauaAGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 119602 0.66 0.965302
Target:  5'- gGCCGCGCGCgcaccGGCGccagcagccCGCg -3'
miRNA:   3'- aCGGCGCGCG-----CCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 124864 0.66 0.967575
Target:  5'- gGCgaGCGCGCGGCccgcgGUUUUUaUGCg -3'
miRNA:   3'- aCGg-CGCGCGCCGcaaa-UAAGAA-GCG- -5'
6500 5' -53.3 NC_001847.1 + 5235 0.66 0.964294
Target:  5'- gGgCGCGCGCGGCaaaggGUUUgccUGCg -3'
miRNA:   3'- aCgGCGCGCGCCGcaaa-UAAGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 100438 0.66 0.967575
Target:  5'- cGCUccaGCGCGGCGcgcaagUCcUCGCg -3'
miRNA:   3'- aCGGcg-CGCGCCGCaaaua-AGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 52094 0.66 0.965633
Target:  5'- gGCCGCGcCGCGGCccaag-----CGCa -3'
miRNA:   3'- aCGGCGC-GCGCCGcaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 99107 0.66 0.964294
Target:  5'- aGCCGCGCGUaGUGcucg-UCcgCGCg -3'
miRNA:   3'- aCGGCGCGCGcCGCaaauaAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 96678 0.66 0.963954
Target:  5'- cGUCGUGCGCgggggccGGCGggUAcgCgUCGCc -3'
miRNA:   3'- aCGGCGCGCG-------CCGCaaAUaaGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 78294 0.66 0.967575
Target:  5'- gGCCGCcgggcgcagacgGCGCGGCGcgg---CgcgCGCg -3'
miRNA:   3'- aCGGCG------------CGCGCCGCaaauaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 34744 0.66 0.967575
Target:  5'- cGCaUGCGCGgGGCuUUUAUggcccaggUCGCg -3'
miRNA:   3'- aCG-GCGCGCgCCGcAAAUAaga-----AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.