miRNA display CGI


Results 21 - 40 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 50149 0.66 0.960788
Target:  5'- gGUCGuCGC-CGGCGUgacggUCUUCuGCc -3'
miRNA:   3'- aCGGC-GCGcGCCGCAaaua-AGAAG-CG- -5'
6500 5' -53.3 NC_001847.1 + 61259 0.66 0.962218
Target:  5'- cGCUGCGCGgGGCGccggcggaaCUgacgCGCc -3'
miRNA:   3'- aCGGCGCGCgCCGCaaauaa---GAa---GCG- -5'
6500 5' -53.3 NC_001847.1 + 119602 0.66 0.965302
Target:  5'- gGCCGCGCGCgcaccGGCGccagcagccCGCg -3'
miRNA:   3'- aCGGCGCGCG-----CCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 78294 0.66 0.967575
Target:  5'- gGCCGCcgggcgcagacgGCGCGGCGcgg---CgcgCGCg -3'
miRNA:   3'- aCGGCG------------CGCGCCGCaaauaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 38977 0.66 0.957051
Target:  5'- gGCCGCgGCGgGGCuuaguagacgauGUggacGUUCUcgUCGCg -3'
miRNA:   3'- aCGGCG-CGCgCCG------------CAaa--UAAGA--AGCG- -5'
6500 5' -53.3 NC_001847.1 + 75277 0.66 0.959322
Target:  5'- gGCCGCGCGC-GCGgcccucggCgacCGCg -3'
miRNA:   3'- aCGGCGCGCGcCGCaaauaa--Gaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 5738 0.66 0.964294
Target:  5'- cUGCC-CGCGgGGCG---GUUCgcCGCc -3'
miRNA:   3'- -ACGGcGCGCgCCGCaaaUAAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 100438 0.66 0.967575
Target:  5'- cGCUccaGCGCGGCGcgcaagUCcUCGCg -3'
miRNA:   3'- aCGGcg-CGCGCCGCaaaua-AGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 11576 0.66 0.960788
Target:  5'- gGCUGC-CGCGGUGccggUUGcUUCUgCGCu -3'
miRNA:   3'- aCGGCGcGCGCCGCa---AAU-AAGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 124864 0.66 0.967575
Target:  5'- gGCgaGCGCGCGGCccgcgGUUUUUaUGCg -3'
miRNA:   3'- aCGg-CGCGCGCCGcaaa-UAAGAA-GCG- -5'
6500 5' -53.3 NC_001847.1 + 96678 0.66 0.963954
Target:  5'- cGUCGUGCGCgggggccGGCGggUAcgCgUCGCc -3'
miRNA:   3'- aCGGCGCGCG-------CCGCaaAUaaGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 73559 0.66 0.960788
Target:  5'- gGCCuuugaGUGCGCGGUGcugugUCUgcaccUCGCg -3'
miRNA:   3'- aCGG-----CGCGCGCCGCaaauaAGA-----AGCG- -5'
6500 5' -53.3 NC_001847.1 + 5235 0.66 0.964294
Target:  5'- gGgCGCGCGCGGCaaaggGUUUgccUGCg -3'
miRNA:   3'- aCgGCGCGCGCCGcaaa-UAAGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 39113 0.66 0.964968
Target:  5'- cGCUGCGCGacagggcuacguacaCGGCGUUgagccgcagguUUCcgCGCg -3'
miRNA:   3'- aCGGCGCGC---------------GCCGCAAau---------AAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 73070 0.66 0.967575
Target:  5'- cGCCGCGgGCG-CGgaag-UCgaCGCg -3'
miRNA:   3'- aCGGCGCgCGCcGCaaauaAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 70754 0.66 0.967575
Target:  5'- cGCCGCGCagaGCGgGCGccgcauuuuUUUGUcuggcggcucgCUUCGCg -3'
miRNA:   3'- aCGGCGCG---CGC-CGC---------AAAUAa----------GAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 1398 0.66 0.956665
Target:  5'- cUGCCGguacuCGCGCGGCGgcacgggcacCGCg -3'
miRNA:   3'- -ACGGC-----GCGCGCCGCaaauaagaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 33333 0.66 0.957051
Target:  5'- gGCgGCGCGCuGCGUgacggUGggCcccUCGCa -3'
miRNA:   3'- aCGgCGCGCGcCGCAa----AUaaGa--AGCG- -5'
6500 5' -53.3 NC_001847.1 + 19250 0.66 0.957051
Target:  5'- cGuCCGCGUcCGGCGgaccgGUUCUggccggcggCGCg -3'
miRNA:   3'- aC-GGCGCGcGCCGCaaa--UAAGAa--------GCG- -5'
6500 5' -53.3 NC_001847.1 + 13931 0.66 0.958949
Target:  5'- gUGCCGCGcCGCGGCaGgggggccgccccgCGCa -3'
miRNA:   3'- -ACGGCGC-GCGCCG-Caaauaagaa----GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.