miRNA display CGI


Results 61 - 80 of 533 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 24344 0.74 0.592583
Target:  5'- cGCCGCGCGCGGCc-----UUUUCGg -3'
miRNA:   3'- aCGGCGCGCGCCGcaaauaAGAAGCg -5'
6500 5' -53.3 NC_001847.1 + 93352 0.74 0.592583
Target:  5'- cGuaGCGCGCGGCGUUUAgcg-UUGUg -3'
miRNA:   3'- aCggCGCGCGCCGCAAAUaagaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 89930 0.73 0.665873
Target:  5'- gGCCGCGCucGCGGCGgcg---CU-CGCg -3'
miRNA:   3'- aCGGCGCG--CGCCGCaaauaaGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 104738 0.73 0.665873
Target:  5'- cGCCGCgGCGCGGCGgccacUCgggcCGCc -3'
miRNA:   3'- aCGGCG-CGCGCCGCaaauaAGaa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 40181 0.73 0.666917
Target:  5'- gGCUGCGCGCGGCGgaacggc--CGCc -3'
miRNA:   3'- aCGGCGCGCGCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 82905 0.73 0.666917
Target:  5'- cGCgGCGCGCGGCGcccgggggcuuuUUCU-CGCu -3'
miRNA:   3'- aCGgCGCGCGCCGCaaau--------AAGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 43721 0.73 0.674217
Target:  5'- cGCUGCGCGCGGaCGUggugg---CGCa -3'
miRNA:   3'- aCGGCGCGCGCC-GCAaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 120085 0.73 0.675258
Target:  5'- aGCCGCGCGgGGCGggagauaaagCGCc -3'
miRNA:   3'- aCGGCGCGCgCCGCaaauaagaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 5675 0.73 0.686687
Target:  5'- cGUCGCGCGCGGCGg-----CggcCGCc -3'
miRNA:   3'- aCGGCGCGCGCCGCaaauaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 91596 0.73 0.686687
Target:  5'- cGCgGCGCucGCGGCGgcgcUUCUccUCGCg -3'
miRNA:   3'- aCGgCGCG--CGCCGCaaauAAGA--AGCG- -5'
6500 5' -53.3 NC_001847.1 + 30922 0.73 0.665873
Target:  5'- cGCCgGCgGUGCGGCGgaggc-CUUCGCa -3'
miRNA:   3'- aCGG-CG-CGCGCCGCaaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 93307 0.73 0.655418
Target:  5'- gGCCGCGCGCGcGUGUgUAgg---CGCg -3'
miRNA:   3'- aCGGCGCGCGC-CGCAaAUaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 104326 0.74 0.592583
Target:  5'- aGCCGCGCGUaGGCGgcc--UCggCGCg -3'
miRNA:   3'- aCGGCGCGCG-CCGCaaauaAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 133425 0.74 0.592583
Target:  5'- gGCCGCgGCGCGGCGgcgg--CUgaUCGUg -3'
miRNA:   3'- aCGGCG-CGCGCCGCaaauaaGA--AGCG- -5'
6500 5' -53.3 NC_001847.1 + 69096 0.74 0.600935
Target:  5'- cGCCGCGCGCGGaCGggcgggccgcGUUCUcggCGUa -3'
miRNA:   3'- aCGGCGCGCGCC-GCaaa-------UAAGAa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 33798 0.74 0.603026
Target:  5'- gGCUGCGCGCGGCGcc----CggCGCg -3'
miRNA:   3'- aCGGCGCGCGCCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 51548 0.74 0.603026
Target:  5'- gGCUGCGCGCGcGCGcgUGcUCgggcUCGCg -3'
miRNA:   3'- aCGGCGCGCGC-CGCaaAUaAGa---AGCG- -5'
6500 5' -53.3 NC_001847.1 + 124341 0.74 0.623972
Target:  5'- cGCCuGCGCGCGGCGuUUUAUUUa---- -3'
miRNA:   3'- aCGG-CGCGCGCCGC-AAAUAAGaagcg -5'
6500 5' -53.3 NC_001847.1 + 10087 0.74 0.631313
Target:  5'- cGCCGCGCGCgggagcacaagcGGCGgggaaagccgcCUUCGCg -3'
miRNA:   3'- aCGGCGCGCG------------CCGCaaauaa-----GAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 28005 0.73 0.644944
Target:  5'- cUGCaGCGCGCGGCGUgccgcgCUUacgaGCg -3'
miRNA:   3'- -ACGgCGCGCGCCGCAaauaa-GAAg---CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.