miRNA display CGI


Results 61 - 80 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 128086 0.66 0.992414
Target:  5'- cGCCGCGU---GCCUuggUGGCGaaaGCCCa -3'
miRNA:   3'- -CGGCGCGcucUGGGuaaAUUGU---UGGG- -5'
6501 3' -51.1 NC_001847.1 + 77078 0.66 0.991289
Target:  5'- gGCgCGCGCGc-GCgCCAaucGGCGGCCCg -3'
miRNA:   3'- -CG-GCGCGCucUG-GGUaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 131370 0.66 0.992414
Target:  5'- gGCgGCGCGGGcgacACCCGcgagggccucUggGACuGCCCc -3'
miRNA:   3'- -CGgCGCGCUC----UGGGU----------AaaUUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 10874 0.66 0.990036
Target:  5'- --gGCGCGGGcGCCCAggcaGACcGCCUg -3'
miRNA:   3'- cggCGCGCUC-UGGGUaaa-UUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 131609 0.66 0.992414
Target:  5'- cGCCGCGCucgcGGCCguaGUcgGccACGGCCCg -3'
miRNA:   3'- -CGGCGCGcu--CUGGg--UAaaU--UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 5444 0.66 0.992414
Target:  5'- cCUGCGUGuuGCCCGacggcggUGGCGGCCg -3'
miRNA:   3'- cGGCGCGCucUGGGUaa-----AUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 8397 0.66 0.991289
Target:  5'- uGCCGCGU-AGGCUacg--GGCAGCCg -3'
miRNA:   3'- -CGGCGCGcUCUGGguaaaUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 3750 0.66 0.988646
Target:  5'- gGCCGUGC-AGcgcuucguCgCCGUcgAGCAGCCCg -3'
miRNA:   3'- -CGGCGCGcUCu-------G-GGUAaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 17588 0.66 0.987111
Target:  5'- aGCaCGgGCGGGGCCCGcggaaaggggUUGcgcACGGCCUc -3'
miRNA:   3'- -CG-GCgCGCUCUGGGUa---------AAU---UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 46857 0.66 0.987111
Target:  5'- aGCCGCGUc-GGCCCAgcaGGCGAagcgcucccCCCg -3'
miRNA:   3'- -CGGCGCGcuCUGGGUaaaUUGUU---------GGG- -5'
6501 3' -51.1 NC_001847.1 + 120327 0.66 0.992414
Target:  5'- aCCGCGCGcaGGGCgCCGc---GCAGCuCCg -3'
miRNA:   3'- cGGCGCGC--UCUG-GGUaaauUGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 29329 0.66 0.991289
Target:  5'- aGCCgcgaGCGCGAGugCgCG---GGCGGCCg -3'
miRNA:   3'- -CGG----CGCGCUCugG-GUaaaUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 38017 0.66 0.988646
Target:  5'- aGCuCGCGCGGGugCUGUgg-GCGcgcGCCg -3'
miRNA:   3'- -CG-GCGCGCUCugGGUAaauUGU---UGGg -5'
6501 3' -51.1 NC_001847.1 + 54113 0.66 0.988646
Target:  5'- cGCCGCGCGGGAggC-----GCAGCaCCg -3'
miRNA:   3'- -CGGCGCGCUCUggGuaaauUGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 104326 0.66 0.9885
Target:  5'- aGCCGCGCGuaggcGGCCuCGgcgcGCGcgaaggcGCCCg -3'
miRNA:   3'- -CGGCGCGCu----CUGG-GUaaauUGU-------UGGG- -5'
6501 3' -51.1 NC_001847.1 + 34253 0.66 0.989497
Target:  5'- cGCgGCGCGAGGCgCAgaccggcgcgcGGCGGCUg -3'
miRNA:   3'- -CGgCGCGCUCUGgGUaaa--------UUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 108257 0.66 0.992414
Target:  5'- cCUGCGUGuuGCCCGacggcggUGGCGGCCg -3'
miRNA:   3'- cGGCGCGCucUGGGUaa-----AUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 133190 0.66 0.987111
Target:  5'- cGCCGCccgGCGAGgacgaGCgCCG----GCGGCCCg -3'
miRNA:   3'- -CGGCG---CGCUC-----UG-GGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 67980 0.66 0.988646
Target:  5'- cGCCgagaGCGgGGGGCCUGUc--AUGGCCCa -3'
miRNA:   3'- -CGG----CGCgCUCUGGGUAaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 113764 0.66 0.992414
Target:  5'- cGUCGC-UGAGAgCCGcccgaGGCGGCCCg -3'
miRNA:   3'- -CGGCGcGCUCUgGGUaaa--UUGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.