miRNA display CGI


Results 41 - 60 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 54254 0.66 0.991289
Target:  5'- cGCUGCgGUGGcGCCCGacgAGCGGCUCg -3'
miRNA:   3'- -CGGCG-CGCUcUGGGUaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 5025 0.66 0.992414
Target:  5'- -gCGCGCGAGggcgcucucguACUCGUcc--CAGCCCg -3'
miRNA:   3'- cgGCGCGCUC-----------UGGGUAaauuGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 33013 0.66 0.988646
Target:  5'- gGUCGCGCgGAGugCC-----GCcGCCCu -3'
miRNA:   3'- -CGGCGCG-CUCugGGuaaauUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 34253 0.66 0.989497
Target:  5'- cGCgGCGCGAGGCgCAgaccggcgcgcGGCGGCUg -3'
miRNA:   3'- -CGgCGCGCUCUGgGUaaa--------UUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 100590 0.66 0.988646
Target:  5'- cGCCGCuGCaGcGGCCg----AGCAGCCCg -3'
miRNA:   3'- -CGGCG-CG-CuCUGGguaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 64116 0.66 0.991289
Target:  5'- cGCgGCGCcAGACgCGUgc-GCGGCCg -3'
miRNA:   3'- -CGgCGCGcUCUGgGUAaauUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 48944 0.66 0.989634
Target:  5'- aGgCGCGCGAcuggaccgcccccgGugCCGUcagacgcuUUAACGGCCUc -3'
miRNA:   3'- -CgGCGCGCU--------------CugGGUA--------AAUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 80823 0.66 0.990036
Target:  5'- gGCCGCGCGccgcGACUgGgggGGCAgAUCCg -3'
miRNA:   3'- -CGGCGCGCu---CUGGgUaaaUUGU-UGGG- -5'
6501 3' -51.1 NC_001847.1 + 63564 0.66 0.992199
Target:  5'- cGCCGgGCGGcacuguGACCCucguguuCGACCg -3'
miRNA:   3'- -CGGCgCGCU------CUGGGuaaauu-GUUGGg -5'
6501 3' -51.1 NC_001847.1 + 54113 0.66 0.988646
Target:  5'- cGCCGCGCGGGAggC-----GCAGCaCCg -3'
miRNA:   3'- -CGGCGCGCUCUggGuaaauUGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 38017 0.66 0.988646
Target:  5'- aGCuCGCGCGGGugCUGUgg-GCGcgcGCCg -3'
miRNA:   3'- -CG-GCGCGCUCugGGUAaauUGU---UGGg -5'
6501 3' -51.1 NC_001847.1 + 41444 0.66 0.991289
Target:  5'- aGUCGC-CGGGGCCCAUg----AACCg -3'
miRNA:   3'- -CGGCGcGCUCUGGGUAaauugUUGGg -5'
6501 3' -51.1 NC_001847.1 + 76492 0.66 0.992414
Target:  5'- cGCCugcaGCGCcuGGGAgCCCGUguucGCGGCCUa -3'
miRNA:   3'- -CGG----CGCG--CUCU-GGGUAaau-UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 126914 0.66 0.992414
Target:  5'- aGCUgGCGCGGGuCCCAg--GGCucgcACUCg -3'
miRNA:   3'- -CGG-CGCGCUCuGGGUaaaUUGu---UGGG- -5'
6501 3' -51.1 NC_001847.1 + 67980 0.66 0.988646
Target:  5'- cGCCgagaGCGgGGGGCCUGUc--AUGGCCCa -3'
miRNA:   3'- -CGG----CGCgCUCUGGGUAaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 19651 0.66 0.989634
Target:  5'- gGCCGCuuGCG-GGCCCGgccgccggaaacuGCGACCg -3'
miRNA:   3'- -CGGCG--CGCuCUGGGUaaau---------UGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 129919 0.66 0.987111
Target:  5'- uGCCGCGCGcGcCCCGcc-GGCcGCCg -3'
miRNA:   3'- -CGGCGCGCuCuGGGUaaaUUGuUGGg -5'
6501 3' -51.1 NC_001847.1 + 17588 0.66 0.987111
Target:  5'- aGCaCGgGCGGGGCCCGcggaaaggggUUGcgcACGGCCUc -3'
miRNA:   3'- -CG-GCgCGCUCUGGGUa---------AAU---UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 63065 0.66 0.991289
Target:  5'- aGCUGgGCGAGGCgCGggc-GCAGCUUc -3'
miRNA:   3'- -CGGCgCGCUCUGgGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 39633 0.66 0.987111
Target:  5'- aGCCugGCGCGcccgccAGGCCCAcg-GGCGGCgCa -3'
miRNA:   3'- -CGG--CGCGC------UCUGGGUaaaUUGUUGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.