miRNA display CGI


Results 41 - 60 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 10066 0.79 0.519343
Target:  5'- gGCCGCGCG-GGCCCA----GCGcCCCg -3'
miRNA:   3'- -CGGCGCGCuCUGGGUaaauUGUuGGG- -5'
6501 3' -51.1 NC_001847.1 + 10204 0.76 0.676117
Target:  5'- cGCCGcCGCcGGGCCCAg--GGCGcGCCCg -3'
miRNA:   3'- -CGGC-GCGcUCUGGGUaaaUUGU-UGGG- -5'
6501 3' -51.1 NC_001847.1 + 10318 0.67 0.981537
Target:  5'- uGCUGCgGCGgcaaccauGGACCCGU---ACGACgCCa -3'
miRNA:   3'- -CGGCG-CGC--------UCUGGGUAaauUGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 10383 0.77 0.591733
Target:  5'- cGCCGCucgcgGCGGGGCCgCuuuaUGACGGCCCg -3'
miRNA:   3'- -CGGCG-----CGCUCUGG-Guaa-AUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 10561 0.76 0.655067
Target:  5'- gGCCgGCGCcGGGCCCGgcgccGGCGGCCCc -3'
miRNA:   3'- -CGG-CGCGcUCUGGGUaaa--UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 10592 0.67 0.98542
Target:  5'- cCCGCGCGcgcGGGCCgGcgc--CGGCCCg -3'
miRNA:   3'- cGGCGCGC---UCUGGgUaaauuGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 10727 0.67 0.980893
Target:  5'- cGCCGCcaGCGAGuuuaggggggcgggGCCCc----GCGGCCCc -3'
miRNA:   3'- -CGGCG--CGCUC--------------UGGGuaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 10874 0.66 0.990036
Target:  5'- --gGCGCGGGcGCCCAggcaGACcGCCUg -3'
miRNA:   3'- cggCGCGCUC-UGGGUaaa-UUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 11360 0.67 0.98542
Target:  5'- cGCCGCGC-AGGCCCcga----GGCCa -3'
miRNA:   3'- -CGGCGCGcUCUGGGuaaauugUUGGg -5'
6501 3' -51.1 NC_001847.1 + 11369 0.71 0.909946
Target:  5'- gGCCGCGCGgcgcgaucaacuacgGGACgacuccagaggCCAUguuGCGGCCCc -3'
miRNA:   3'- -CGGCGCGC---------------UCUG-----------GGUAaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 11441 0.66 0.992414
Target:  5'- uGCCGUGCGAccccgcgccagcGGCuaCCGUgcgcgUGGCgAGCCCc -3'
miRNA:   3'- -CGGCGCGCU------------CUG--GGUAa----AUUG-UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 11755 0.77 0.578099
Target:  5'- aGCCGCaCGAGGCuuugugugagcgcuCCAUUUAuauGCAGCCCu -3'
miRNA:   3'- -CGGCGcGCUCUG--------------GGUAAAU---UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 12301 0.69 0.94996
Target:  5'- uGCCcCGCaAGACUac-UUGACGGCCCa -3'
miRNA:   3'- -CGGcGCGcUCUGGguaAAUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 12306 0.73 0.81469
Target:  5'- aGCCaggGCGCG-GGCCCGgugGGCGcGCCCg -3'
miRNA:   3'- -CGG---CGCGCuCUGGGUaaaUUGU-UGGG- -5'
6501 3' -51.1 NC_001847.1 + 12717 0.67 0.98542
Target:  5'- uGCCGCuGCccaggauuuugGAGGgCCGggu-GCGGCCCa -3'
miRNA:   3'- -CGGCG-CG-----------CUCUgGGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 13002 0.66 0.987898
Target:  5'- cCCGCGCGGcGCCCugcgcgccggccgucGCGACCUg -3'
miRNA:   3'- cGGCGCGCUcUGGGuaaau----------UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 13082 0.7 0.925287
Target:  5'- uGCUGCGCGAGugCgCAacugccauuuUUUGucGCGGCCg -3'
miRNA:   3'- -CGGCGCGCUCugG-GU----------AAAU--UGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 13129 0.66 0.990553
Target:  5'- gGCCGCGaucAGcACCCcggucgcguuGCGACCCa -3'
miRNA:   3'- -CGGCGCgc-UC-UGGGuaaau-----UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 13686 1.16 0.003024
Target:  5'- aGCCGCGCGAGACCCAUUUAACAACCCg -3'
miRNA:   3'- -CGGCGCGCUCUGGGUAAAUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 13945 0.68 0.968498
Target:  5'- -aUGCGCGAGcugcggcugcgGCCCGU--GGgAGCCCg -3'
miRNA:   3'- cgGCGCGCUC-----------UGGGUAaaUUgUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.