miRNA display CGI


Results 21 - 40 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 3989 0.68 0.968498
Target:  5'- gGCCggGCGCGcGGCCCcgcggGGCGccggGCCCg -3'
miRNA:   3'- -CGG--CGCGCuCUGGGuaaa-UUGU----UGGG- -5'
6501 3' -51.1 NC_001847.1 + 4039 0.68 0.974054
Target:  5'- cGCCGCGCgccccgaGAGAUCCAcggugAACAcgguACCg -3'
miRNA:   3'- -CGGCGCG-------CUCUGGGUaaa--UUGU----UGGg -5'
6501 3' -51.1 NC_001847.1 + 4186 0.71 0.907434
Target:  5'- gGCCGCGCGcccguGGGCCgCGcgcaGGCAGCCa -3'
miRNA:   3'- -CGGCGCGC-----UCUGG-GUaaa-UUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 5025 0.66 0.992414
Target:  5'- -gCGCGCGAGggcgcucucguACUCGUcc--CAGCCCg -3'
miRNA:   3'- cgGCGCGCUC-----------UGGGUAaauuGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 5066 0.68 0.974325
Target:  5'- gGUCGgGCGcGGCCCAggacGGCGACgCg -3'
miRNA:   3'- -CGGCgCGCuCUGGGUaaa-UUGUUGgG- -5'
6501 3' -51.1 NC_001847.1 + 5359 0.71 0.894275
Target:  5'- cGCgGCGCGgccGGGCCCAggcuccGGCggUCCg -3'
miRNA:   3'- -CGgCGCGC---UCUGGGUaaa---UUGuuGGG- -5'
6501 3' -51.1 NC_001847.1 + 5444 0.66 0.992414
Target:  5'- cCUGCGUGuuGCCCGacggcggUGGCGGCCg -3'
miRNA:   3'- cGGCGCGCucUGGGUaa-----AUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 5829 0.67 0.979326
Target:  5'- cCCGCGCccggcAGGCCCGccuuGCAccagGCCCg -3'
miRNA:   3'- cGGCGCGc----UCUGGGUaaauUGU----UGGG- -5'
6501 3' -51.1 NC_001847.1 + 6766 0.67 0.979326
Target:  5'- gGCCgGUGCGAGGCgCCAgcugcuccgUGGCcACCa -3'
miRNA:   3'- -CGG-CGCGCUCUG-GGUaa-------AUUGuUGGg -5'
6501 3' -51.1 NC_001847.1 + 7898 0.78 0.560378
Target:  5'- aGCCGCGCGGGGCgCGc--GGCGGCCg -3'
miRNA:   3'- -CGGCGCGCUCUGgGUaaaUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 8088 0.69 0.940849
Target:  5'- cGCCGCgGCGAGAUCgGcgacGCGGCgCCa -3'
miRNA:   3'- -CGGCG-CGCUCUGGgUaaauUGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 8148 0.69 0.940849
Target:  5'- uGCUGCGCGAGGgCUAguugggAAgGGCUCg -3'
miRNA:   3'- -CGGCGCGCUCUgGGUaaa---UUgUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 8397 0.66 0.991289
Target:  5'- uGCCGCGU-AGGCUacg--GGCAGCCg -3'
miRNA:   3'- -CGGCGCGcUCUGGguaaaUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 8491 0.7 0.930729
Target:  5'- gGCCGgggGCGGGGCCCcuuacGugGGCCCc -3'
miRNA:   3'- -CGGCg--CGCUCUGGGuaaa-UugUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 8596 0.72 0.840785
Target:  5'- aGCCGCGCGAGcgucaGCCgCAgc--GCAAgCCCc -3'
miRNA:   3'- -CGGCGCGCUC-----UGG-GUaaauUGUU-GGG- -5'
6501 3' -51.1 NC_001847.1 + 8640 0.66 0.987111
Target:  5'- gGCCGCuGCG-GACUCG---GGC-GCCCa -3'
miRNA:   3'- -CGGCG-CGCuCUGGGUaaaUUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 9500 0.67 0.976925
Target:  5'- cGCCGCGaCGAgcgGACCCGagccgagcgGGCGGCgCg -3'
miRNA:   3'- -CGGCGC-GCU---CUGGGUaaa------UUGUUGgG- -5'
6501 3' -51.1 NC_001847.1 + 9605 0.68 0.971518
Target:  5'- aGCCGCG-GGGACgaCCGU--AGCugcGCCCg -3'
miRNA:   3'- -CGGCGCgCUCUG--GGUAaaUUGu--UGGG- -5'
6501 3' -51.1 NC_001847.1 + 9635 0.73 0.796395
Target:  5'- cGCCGCGCc-GGCCCGccgcucgAGCAGCCg -3'
miRNA:   3'- -CGGCGCGcuCUGGGUaaa----UUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 9914 0.67 0.981537
Target:  5'- gGCCGC-CGAGuacGCCCGgcaGGCGGCUg -3'
miRNA:   3'- -CGGCGcGCUC---UGGGUaaaUUGUUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.