miRNA display CGI


Results 21 - 40 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 77734 0.77 0.602257
Target:  5'- cGCgCGUGCGAGGCCCGcccgGACcuACCCc -3'
miRNA:   3'- -CG-GCGCGCUCUGGGUaaa-UUGu-UGGG- -5'
6501 3' -51.1 NC_001847.1 + 108761 0.77 0.612805
Target:  5'- uGCCGCGCuGGGCgCCGgacgcgccgGGCGGCCCa -3'
miRNA:   3'- -CGGCGCGcUCUG-GGUaaa------UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 130952 0.77 0.612805
Target:  5'- uGCCuGCGCGcGGCCCAcgggcgcGCGGCCCa -3'
miRNA:   3'- -CGG-CGCGCuCUGGGUaaau---UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 30020 0.77 0.612805
Target:  5'- cCCGCGUgcuGGGGCCCAUgccgcccGGCGGCCCc -3'
miRNA:   3'- cGGCGCG---CUCUGGGUAaa-----UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 92145 0.77 0.612805
Target:  5'- cGCCGUccGCGGGGCCCGcc-GACAgcgaACCCg -3'
miRNA:   3'- -CGGCG--CGCUCUGGGUaaaUUGU----UGGG- -5'
6501 3' -51.1 NC_001847.1 + 132833 0.77 0.612805
Target:  5'- cCCGCGUgcuGGGGCCCAUgccgcccGGCGGCCCc -3'
miRNA:   3'- cGGCGCG---CUCUGGGUAaa-----UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 132575 0.77 0.623369
Target:  5'- gGCCGCGCaGGcGCCCGcgccgaaGACAGCCCg -3'
miRNA:   3'- -CGGCGCGcUC-UGGGUaaa----UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 75277 0.76 0.633939
Target:  5'- gGCCGCGCGcgcGGCCCuc--GGCGACCg -3'
miRNA:   3'- -CGGCGCGCu--CUGGGuaaaUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 82466 0.76 0.633939
Target:  5'- gGCCGCGUGcggcGugCCGUggGACgAGCCCg -3'
miRNA:   3'- -CGGCGCGCu---CugGGUAaaUUG-UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 113029 0.76 0.644509
Target:  5'- cGCCGCGCGucugGGACgCCGgc-AGCAGCCg -3'
miRNA:   3'- -CGGCGCGC----UCUG-GGUaaaUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 84461 0.76 0.644509
Target:  5'- cGUCGCGCGAGcacaGCCCGcagGGCAcgucGCCCu -3'
miRNA:   3'- -CGGCGCGCUC----UGGGUaaaUUGU----UGGG- -5'
6501 3' -51.1 NC_001847.1 + 10561 0.76 0.655067
Target:  5'- gGCCgGCGCcGGGCCCGgcgccGGCGGCCCc -3'
miRNA:   3'- -CGG-CGCGcUCUGGGUaaa--UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 80769 0.76 0.655067
Target:  5'- cGCCgGCGCG-GACCgG---GACGACCCg -3'
miRNA:   3'- -CGG-CGCGCuCUGGgUaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 113374 0.76 0.655067
Target:  5'- gGCCgGCGCcGGGCCCGgcgccGGCGGCCCc -3'
miRNA:   3'- -CGG-CGCGcUCUGGGUaaa--UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 89920 0.76 0.655067
Target:  5'- uGCCGCGCGAGGCCgCGcucgcGGCGGCgCu -3'
miRNA:   3'- -CGGCGCGCUCUGG-GUaaa--UUGUUGgG- -5'
6501 3' -51.1 NC_001847.1 + 122155 0.76 0.655067
Target:  5'- cGCCGCGCGGGACgaggagagggaaCCAgc-GACcgGGCCCa -3'
miRNA:   3'- -CGGCGCGCUCUG------------GGUaaaUUG--UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 30244 0.76 0.665606
Target:  5'- cGCCGCGCGGGcCCCGcggGGCGcucGCCg -3'
miRNA:   3'- -CGGCGCGCUCuGGGUaaaUUGU---UGGg -5'
6501 3' -51.1 NC_001847.1 + 121413 0.76 0.665606
Target:  5'- aGCUGCGUGgagggcGGAgCCGUUgAGCGGCCCg -3'
miRNA:   3'- -CGGCGCGC------UCUgGGUAAaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 59134 0.76 0.665606
Target:  5'- gGCCGCGCGGGugguCCCAguugUAcCGGCgCCg -3'
miRNA:   3'- -CGGCGCGCUCu---GGGUaa--AUuGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 133057 0.76 0.665606
Target:  5'- cGCCGCGCGGGcCCCGcggGGCGcucGCCg -3'
miRNA:   3'- -CGGCGCGCUCuGGGUaaaUUGU---UGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.