miRNA display CGI


Results 21 - 40 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 48944 0.66 0.989634
Target:  5'- aGgCGCGCGAcuggaccgcccccgGugCCGUcagacgcuUUAACGGCCUc -3'
miRNA:   3'- -CgGCGCGCU--------------CugGGUA--------AAUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 39633 0.66 0.987111
Target:  5'- aGCCugGCGCGcccgccAGGCCCAcg-GGCGGCgCa -3'
miRNA:   3'- -CGG--CGCGC------UCUGGGUaaaUUGUUGgG- -5'
6501 3' -51.1 NC_001847.1 + 19651 0.66 0.989634
Target:  5'- gGCCGCuuGCG-GGCCCGgccgccggaaacuGCGACCg -3'
miRNA:   3'- -CGGCG--CGCuCUGGGUaaau---------UGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 33580 0.66 0.988646
Target:  5'- gGCCGUGCGcGGugCCGac-GACGuCCUg -3'
miRNA:   3'- -CGGCGCGC-UCugGGUaaaUUGUuGGG- -5'
6501 3' -51.1 NC_001847.1 + 10874 0.66 0.990036
Target:  5'- --gGCGCGGGcGCCCAggcaGACcGCCUg -3'
miRNA:   3'- cggCGCGCUC-UGGGUaaa-UUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 38017 0.66 0.988646
Target:  5'- aGCuCGCGCGGGugCUGUgg-GCGcgcGCCg -3'
miRNA:   3'- -CG-GCGCGCUCugGGUAaauUGU---UGGg -5'
6501 3' -51.1 NC_001847.1 + 17634 0.66 0.990036
Target:  5'- cGCCGCGCGuGGagCGg--AACcuGCCCa -3'
miRNA:   3'- -CGGCGCGCuCUggGUaaaUUGu-UGGG- -5'
6501 3' -51.1 NC_001847.1 + 3750 0.66 0.988646
Target:  5'- gGCCGUGC-AGcgcuucguCgCCGUcgAGCAGCCCg -3'
miRNA:   3'- -CGGCGCGcUCu-------G-GGUAaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 133190 0.66 0.987111
Target:  5'- cGCCGCccgGCGAGgacgaGCgCCG----GCGGCCCg -3'
miRNA:   3'- -CGGCG---CGCUC-----UG-GGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 116133 0.66 0.987111
Target:  5'- -aCGCGCGAagaGGCCgAg--GGCGccGCCCg -3'
miRNA:   3'- cgGCGCGCU---CUGGgUaaaUUGU--UGGG- -5'
6501 3' -51.1 NC_001847.1 + 39137 0.66 0.987111
Target:  5'- cGCCGCGCuGGGGCUCGaaaaucGCuGCCg -3'
miRNA:   3'- -CGGCGCG-CUCUGGGUaaau--UGuUGGg -5'
6501 3' -51.1 NC_001847.1 + 65400 0.66 0.990036
Target:  5'- cGCCGCGCaccggGAGGCUUuUUUGAUGcUCCg -3'
miRNA:   3'- -CGGCGCG-----CUCUGGGuAAAUUGUuGGG- -5'
6501 3' -51.1 NC_001847.1 + 132205 0.66 0.987111
Target:  5'- cGCCGCGCugGAGGCggCCGcgcUGGCGGCgCg -3'
miRNA:   3'- -CGGCGCG--CUCUG--GGUaa-AUUGUUGgG- -5'
6501 3' -51.1 NC_001847.1 + 27828 0.66 0.98662
Target:  5'- cGCaCGCGCggcugacaugagcgGAGACCCcgU--GCgGGCCCu -3'
miRNA:   3'- -CG-GCGCG--------------CUCUGGGuaAauUG-UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 44698 0.66 0.990036
Target:  5'- gGCCGCGCG-GACCgCGcgcUUAuuuUGGCCUa -3'
miRNA:   3'- -CGGCGCGCuCUGG-GUa--AAUu--GUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 100590 0.66 0.988646
Target:  5'- cGCCGCuGCaGcGGCCg----AGCAGCCCg -3'
miRNA:   3'- -CGGCG-CG-CuCUGGguaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 66267 0.66 0.990036
Target:  5'- gGCCGgG-GAGGCCUcuu---CGGCCCg -3'
miRNA:   3'- -CGGCgCgCUCUGGGuaaauuGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 67980 0.66 0.988646
Target:  5'- cGCCgagaGCGgGGGGCCUGUc--AUGGCCCa -3'
miRNA:   3'- -CGG----CGCgCUCUGGGUAaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 14311 0.66 0.991289
Target:  5'- gGCCGCcucuCGGGGCCuCAUcgAGCGGCg- -3'
miRNA:   3'- -CGGCGc---GCUCUGG-GUAaaUUGUUGgg -5'
6501 3' -51.1 NC_001847.1 + 46857 0.66 0.987111
Target:  5'- aGCCGCGUc-GGCCCAgcaGGCGAagcgcucccCCCg -3'
miRNA:   3'- -CGGCGCGcuCUGGGUaaaUUGUU---------GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.