miRNA display CGI


Results 1 - 20 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 36534 0.65 0.99313
Target:  5'- cGCUGCGCGAGGCggauUCGgagaUUGACGcgcuggcgccgcgcGCCUa -3'
miRNA:   3'- -CGGCGCGCUCUG----GGUa---AAUUGU--------------UGGG- -5'
6501 3' -51.1 NC_001847.1 + 39363 0.65 0.993031
Target:  5'- cGCC-CGCGccGCCCcccgcgccagAGCGGCCCg -3'
miRNA:   3'- -CGGcGCGCucUGGGuaaa------UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 39633 0.66 0.987111
Target:  5'- aGCCugGCGCGcccgccAGGCCCAcg-GGCGGCgCa -3'
miRNA:   3'- -CGG--CGCGC------UCUGGGUaaaUUGUUGgG- -5'
6501 3' -51.1 NC_001847.1 + 3750 0.66 0.988646
Target:  5'- gGCCGUGC-AGcgcuucguCgCCGUcgAGCAGCCCg -3'
miRNA:   3'- -CGGCGCGcUCu-------G-GGUAaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 33580 0.66 0.988646
Target:  5'- gGCCGUGCGcGGugCCGac-GACGuCCUg -3'
miRNA:   3'- -CGGCGCGC-UCugGGUaaaUUGUuGGG- -5'
6501 3' -51.1 NC_001847.1 + 104326 0.66 0.9885
Target:  5'- aGCCGCGCGuaggcGGCCuCGgcgcGCGcgaaggcGCCCg -3'
miRNA:   3'- -CGGCGCGCu----CUGG-GUaaauUGU-------UGGG- -5'
6501 3' -51.1 NC_001847.1 + 129919 0.66 0.987111
Target:  5'- uGCCGCGCGcGcCCCGcc-GGCcGCCg -3'
miRNA:   3'- -CGGCGCGCuCuGGGUaaaUUGuUGGg -5'
6501 3' -51.1 NC_001847.1 + 8640 0.66 0.987111
Target:  5'- gGCCGCuGCG-GACUCG---GGC-GCCCa -3'
miRNA:   3'- -CGGCG-CGCuCUGGGUaaaUUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 132205 0.66 0.987111
Target:  5'- cGCCGCGCugGAGGCggCCGcgcUGGCGGCgCg -3'
miRNA:   3'- -CGGCGCG--CUCUG--GGUaa-AUUGUUGgG- -5'
6501 3' -51.1 NC_001847.1 + 27828 0.66 0.98662
Target:  5'- cGCaCGCGCggcugacaugagcgGAGACCCcgU--GCgGGCCCu -3'
miRNA:   3'- -CG-GCGCG--------------CUCUGGGuaAauUG-UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 116133 0.66 0.987111
Target:  5'- -aCGCGCGAagaGGCCgAg--GGCGccGCCCg -3'
miRNA:   3'- cgGCGCGCU---CUGGgUaaaUUGU--UGGG- -5'
6501 3' -51.1 NC_001847.1 + 17588 0.66 0.987111
Target:  5'- aGCaCGgGCGGGGCCCGcggaaaggggUUGcgcACGGCCUc -3'
miRNA:   3'- -CG-GCgCGCUCUGGGUa---------AAU---UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 30222 0.66 0.988646
Target:  5'- aGCCGCGCGcgcccGGGCCgAggUGcGCGugUCg -3'
miRNA:   3'- -CGGCGCGC-----UCUGGgUaaAU-UGUugGG- -5'
6501 3' -51.1 NC_001847.1 + 39137 0.66 0.987111
Target:  5'- cGCCGCGCuGGGGCUCGaaaaucGCuGCCg -3'
miRNA:   3'- -CGGCGCG-CUCUGGGUaaau--UGuUGGg -5'
6501 3' -51.1 NC_001847.1 + 14865 0.66 0.987111
Target:  5'- gGCCGgGCGAc-CCCAUggucgaaAGCCCc -3'
miRNA:   3'- -CGGCgCGCUcuGGGUAaauug--UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 104761 0.66 0.987111
Target:  5'- gGCCGC-CGGcGCUCGUccucgccgGGCGGCCCg -3'
miRNA:   3'- -CGGCGcGCUcUGGGUAaa------UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 133190 0.66 0.987111
Target:  5'- cGCCGCccgGCGAGgacgaGCgCCG----GCGGCCCg -3'
miRNA:   3'- -CGGCG---CGCUC-----UG-GGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 73150 0.66 0.987111
Target:  5'- cCCGCGCcgcucuucGGGCCCAUUau---GCCCg -3'
miRNA:   3'- cGGCGCGc-------UCUGGGUAAauuguUGGG- -5'
6501 3' -51.1 NC_001847.1 + 46857 0.66 0.987111
Target:  5'- aGCCGCGUc-GGCCCAgcaGGCGAagcgcucccCCCg -3'
miRNA:   3'- -CGGCGCGcuCUGGGUaaaUUGUU---------GGG- -5'
6501 3' -51.1 NC_001847.1 + 33013 0.66 0.988646
Target:  5'- gGUCGCGCgGAGugCC-----GCcGCCCu -3'
miRNA:   3'- -CGGCGCG-CUCugGGuaaauUGuUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.