Results 21 - 40 of 662 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 130952 | 0.77 | 0.612805 |
Target: 5'- uGCCuGCGCGcGGCCCAcgggcgcGCGGCCCa -3' miRNA: 3'- -CGG-CGCGCuCUGGGUaaau---UGUUGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 77734 | 0.77 | 0.602257 |
Target: 5'- cGCgCGUGCGAGGCCCGcccgGACcuACCCc -3' miRNA: 3'- -CG-GCGCGCUCUGGGUaaa-UUGu-UGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 92145 | 0.77 | 0.612805 |
Target: 5'- cGCCGUccGCGGGGCCCGcc-GACAgcgaACCCg -3' miRNA: 3'- -CGGCG--CGCUCUGGGUaaaUUGU----UGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 132833 | 0.77 | 0.612805 |
Target: 5'- cCCGCGUgcuGGGGCCCAUgccgcccGGCGGCCCc -3' miRNA: 3'- cGGCGCG---CUCUGGGUAaa-----UUGUUGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 29584 | 0.77 | 0.591733 |
Target: 5'- uGCCGUcuuGCGAGACCCGgccuuuGCGcCCCa -3' miRNA: 3'- -CGGCG---CGCUCUGGGUaaau--UGUuGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 30020 | 0.77 | 0.612805 |
Target: 5'- cCCGCGUgcuGGGGCCCAUgccgcccGGCGGCCCc -3' miRNA: 3'- cGGCGCG---CUCUGGGUAaa-----UUGUUGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 10383 | 0.77 | 0.591733 |
Target: 5'- cGCCGCucgcgGCGGGGCCgCuuuaUGACGGCCCg -3' miRNA: 3'- -CGGCG-----CGCUCUGG-Guaa-AUUGUUGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 30244 | 0.76 | 0.665606 |
Target: 5'- cGCCGCGCGGGcCCCGcggGGCGcucGCCg -3' miRNA: 3'- -CGGCGCGCUCuGGGUaaaUUGU---UGGg -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 10561 | 0.76 | 0.655067 |
Target: 5'- gGCCgGCGCcGGGCCCGgcgccGGCGGCCCc -3' miRNA: 3'- -CGG-CGCGcUCUGGGUaaa--UUGUUGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 75277 | 0.76 | 0.633939 |
Target: 5'- gGCCGCGCGcgcGGCCCuc--GGCGACCg -3' miRNA: 3'- -CGGCGCGCu--CUGGGuaaaUUGUUGGg -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 61259 | 0.76 | 0.676117 |
Target: 5'- cGCUGCGCGGGGCgCCGgcggaacUGACGcGCCCc -3' miRNA: 3'- -CGGCGCGCUCUG-GGUaa-----AUUGU-UGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 113029 | 0.76 | 0.644509 |
Target: 5'- cGCCGCGCGucugGGACgCCGgc-AGCAGCCg -3' miRNA: 3'- -CGGCGCGC----UCUG-GGUaaaUUGUUGGg -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 122155 | 0.76 | 0.655067 |
Target: 5'- cGCCGCGCGGGACgaggagagggaaCCAgc-GACcgGGCCCa -3' miRNA: 3'- -CGGCGCGCUCUG------------GGUaaaUUG--UUGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 121413 | 0.76 | 0.665606 |
Target: 5'- aGCUGCGUGgagggcGGAgCCGUUgAGCGGCCCg -3' miRNA: 3'- -CGGCGCGC------UCUgGGUAAaUUGUUGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 82466 | 0.76 | 0.633939 |
Target: 5'- gGCCGCGUGcggcGugCCGUggGACgAGCCCg -3' miRNA: 3'- -CGGCGCGCu---CugGGUAaaUUG-UUGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 89920 | 0.76 | 0.655067 |
Target: 5'- uGCCGCGCGAGGCCgCGcucgcGGCGGCgCu -3' miRNA: 3'- -CGGCGCGCUCUGG-GUaaa--UUGUUGgG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 133478 | 0.76 | 0.676117 |
Target: 5'- gGCCGCGCGAcGGCCCGgccgucgGGCAggcgcacguguACCUg -3' miRNA: 3'- -CGGCGCGCU-CUGGGUaaa----UUGU-----------UGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 113017 | 0.76 | 0.676117 |
Target: 5'- cGCCGcCGCcGGGCCCAg--GGCGcGCCCg -3' miRNA: 3'- -CGGC-GCGcUCUGGGUaaaUUGU-UGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 133057 | 0.76 | 0.665606 |
Target: 5'- cGCCGCGCGGGcCCCGcggGGCGcucGCCg -3' miRNA: 3'- -CGGCGCGCUCuGGGUaaaUUGU---UGGg -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 59134 | 0.76 | 0.665606 |
Target: 5'- gGCCGCGCGGGugguCCCAguugUAcCGGCgCCg -3' miRNA: 3'- -CGGCGCGCUCu---GGGUaa--AUuGUUG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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