miRNA display CGI


Results 41 - 60 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 61259 0.76 0.676117
Target:  5'- cGCUGCGCGGGGCgCCGgcggaacUGACGcGCCCc -3'
miRNA:   3'- -CGGCGCGCUCUG-GGUaa-----AUUGU-UGGG- -5'
6501 3' -51.1 NC_001847.1 + 10204 0.76 0.676117
Target:  5'- cGCCGcCGCcGGGCCCAg--GGCGcGCCCg -3'
miRNA:   3'- -CGGC-GCGcUCUGGGUaaaUUGU-UGGG- -5'
6501 3' -51.1 NC_001847.1 + 30665 0.76 0.676117
Target:  5'- gGCCGCGCGAcGGCCCGgccgucgGGCAggcgcacguguACCUg -3'
miRNA:   3'- -CGGCGCGCU-CUGGGUaaa----UUGU-----------UGGG- -5'
6501 3' -51.1 NC_001847.1 + 113017 0.76 0.676117
Target:  5'- cGCCGcCGCcGGGCCCAg--GGCGcGCCCg -3'
miRNA:   3'- -CGGC-GCGcUCUGGGUaaaUUGU-UGGG- -5'
6501 3' -51.1 NC_001847.1 + 133478 0.76 0.676117
Target:  5'- gGCCGCGCGAcGGCCCGgccgucgGGCAggcgcacguguACCUg -3'
miRNA:   3'- -CGGCGCGCU-CUGGGUaaa----UUGU-----------UGGG- -5'
6501 3' -51.1 NC_001847.1 + 99107 0.75 0.686589
Target:  5'- aGCCGCGCGuAGugCUcgUccgcgcGCAGCCCc -3'
miRNA:   3'- -CGGCGCGC-UCugGGuaAau----UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 57907 0.75 0.693891
Target:  5'- cCCGCGCGAccgcgccaaguccgGGCCCG----GCGGCCCg -3'
miRNA:   3'- cGGCGCGCU--------------CUGGGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 99738 0.75 0.697012
Target:  5'- cGCUGCGCGGGugCg--UUGGcCGGCCCg -3'
miRNA:   3'- -CGGCGCGCUCugGguaAAUU-GUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 127004 0.75 0.697012
Target:  5'- aGCCcCGCGAGGCUCGU----CGGCCCg -3'
miRNA:   3'- -CGGcGCGCUCUGGGUAaauuGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 133550 0.75 0.697012
Target:  5'- cGCCGCGCGcuGGCCCG---AGCGGCgCg -3'
miRNA:   3'- -CGGCGCGCu-CUGGGUaaaUUGUUGgG- -5'
6501 3' -51.1 NC_001847.1 + 66718 0.75 0.697012
Target:  5'- gGCCGCuuCGAcGugCCggUUGGCGACCCu -3'
miRNA:   3'- -CGGCGc-GCU-CugGGuaAAUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 24191 0.75 0.697012
Target:  5'- aGCCcCGCGAGGCUCGU----CGGCCCg -3'
miRNA:   3'- -CGGcGCGCUCUGGGUAaauuGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 30737 0.75 0.697012
Target:  5'- cGCCGCGCGcuGGCCCG---AGCGGCgCg -3'
miRNA:   3'- -CGGCGCGCu-CUGGGUaaaUUGUUGgG- -5'
6501 3' -51.1 NC_001847.1 + 83760 0.75 0.717676
Target:  5'- cGCCaCGUGGGACaCCGgcgaGGCAGCCCu -3'
miRNA:   3'- -CGGcGCGCUCUG-GGUaaa-UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 123960 0.75 0.717676
Target:  5'- cCCGCGCG-GACCagc--GGCAGCCCc -3'
miRNA:   3'- cGGCGCGCuCUGGguaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 75039 0.75 0.717676
Target:  5'- cGCCGCGCGAGcgcuuccuguACCUcgUcAGCAACUa -3'
miRNA:   3'- -CGGCGCGCUC----------UGGGuaAaUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 42004 0.75 0.717676
Target:  5'- cCCGCGgGGGGCgCCG----GCAGCCCg -3'
miRNA:   3'- cGGCGCgCUCUG-GGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 69640 0.75 0.717676
Target:  5'- --aGCGCGAGuCCCAgccgcgccGCGACCCg -3'
miRNA:   3'- cggCGCGCUCuGGGUaaau----UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 92877 0.75 0.727895
Target:  5'- cGCCGCGCGAG-CUCGagguGCugcuGCCCa -3'
miRNA:   3'- -CGGCGCGCUCuGGGUaaauUGu---UGGG- -5'
6501 3' -51.1 NC_001847.1 + 103224 0.75 0.727895
Target:  5'- cGCCGCGCGAG-CCgCGgcc-GCGGCCg -3'
miRNA:   3'- -CGGCGCGCUCuGG-GUaaauUGUUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.