miRNA display CGI


Results 41 - 60 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 63065 0.66 0.991289
Target:  5'- aGCUGgGCGAGGCgCGggc-GCAGCUUc -3'
miRNA:   3'- -CGGCgCGCUCUGgGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 98158 0.66 0.991289
Target:  5'- cGCCGCucgGCGcGGGCCCGcucgccGGC-GCCCg -3'
miRNA:   3'- -CGGCG---CGC-UCUGGGUaaa---UUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 29329 0.66 0.991289
Target:  5'- aGCCgcgaGCGCGAGugCgCG---GGCGGCCg -3'
miRNA:   3'- -CGG----CGCGCUCugG-GUaaaUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 41444 0.66 0.991289
Target:  5'- aGUCGC-CGGGGCCCAUg----AACCg -3'
miRNA:   3'- -CGGCGcGCUCUGGGUAaauugUUGGg -5'
6501 3' -51.1 NC_001847.1 + 54254 0.66 0.991289
Target:  5'- cGCUGCgGUGGcGCCCGacgAGCGGCUCg -3'
miRNA:   3'- -CGGCG-CGCUcUGGGUaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 77078 0.66 0.991289
Target:  5'- gGCgCGCGCGc-GCgCCAaucGGCGGCCCg -3'
miRNA:   3'- -CG-GCGCGCucUG-GGUaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 8397 0.66 0.991289
Target:  5'- uGCCGCGU-AGGCUacg--GGCAGCCg -3'
miRNA:   3'- -CGGCGCGcUCUGGguaaaUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 14311 0.66 0.991289
Target:  5'- gGCCGCcucuCGGGGCCuCAUcgAGCGGCg- -3'
miRNA:   3'- -CGGCGc---GCUCUGG-GUAaaUUGUUGgg -5'
6501 3' -51.1 NC_001847.1 + 116729 0.66 0.991289
Target:  5'- cCCGCGCGcg--CUGUUcGACAGCCCc -3'
miRNA:   3'- cGGCGCGCucugGGUAAaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 105871 0.66 0.990927
Target:  5'- cGCCGCGCGAaucgccgccacguaG-UCCGUgc-GCGGCCg -3'
miRNA:   3'- -CGGCGCGCU--------------CuGGGUAaauUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 114343 0.66 0.990804
Target:  5'- cGCCGC-CGaAGcACCCGccgcgaugcuGCAGCCCc -3'
miRNA:   3'- -CGGCGcGC-UC-UGGGUaaau------UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 13129 0.66 0.990553
Target:  5'- gGCCGCGaucAGcACCCcggucgcguuGCGACCCa -3'
miRNA:   3'- -CGGCGCgc-UC-UGGGuaaau-----UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 36133 0.66 0.990036
Target:  5'- aGCCGCGCGcgccgcggacgcGGGCCUgc--AGCGGCUg -3'
miRNA:   3'- -CGGCGCGC------------UCUGGGuaaaUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 17634 0.66 0.990036
Target:  5'- cGCCGCGCGuGGagCGg--AACcuGCCCa -3'
miRNA:   3'- -CGGCGCGCuCUggGUaaaUUGu-UGGG- -5'
6501 3' -51.1 NC_001847.1 + 65400 0.66 0.990036
Target:  5'- cGCCGCGCaccggGAGGCUUuUUUGAUGcUCCg -3'
miRNA:   3'- -CGGCGCG-----CUCUGGGuAAAUUGUuGGG- -5'
6501 3' -51.1 NC_001847.1 + 68225 0.66 0.990036
Target:  5'- gGCCGCgGCGGGGCCgCA---AGCAcGCUUg -3'
miRNA:   3'- -CGGCG-CGCUCUGG-GUaaaUUGU-UGGG- -5'
6501 3' -51.1 NC_001847.1 + 10874 0.66 0.990036
Target:  5'- --gGCGCGGGcGCCCAggcaGACcGCCUg -3'
miRNA:   3'- cggCGCGCUC-UGGGUaaa-UUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 80823 0.66 0.990036
Target:  5'- gGCCGCGCGccgcGACUgGgggGGCAgAUCCg -3'
miRNA:   3'- -CGGCGCGCu---CUGGgUaaaUUGU-UGGG- -5'
6501 3' -51.1 NC_001847.1 + 80861 0.66 0.990036
Target:  5'- gGCgCGCGuCGAGG-CCGUccGGCAgcacGCCCg -3'
miRNA:   3'- -CG-GCGC-GCUCUgGGUAaaUUGU----UGGG- -5'
6501 3' -51.1 NC_001847.1 + 66267 0.66 0.990036
Target:  5'- gGCCGgG-GAGGCCUcuu---CGGCCCg -3'
miRNA:   3'- -CGGCgCgCUCUGGGuaaauuGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.