miRNA display CGI


Results 61 - 80 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 65400 0.66 0.990036
Target:  5'- cGCCGCGCaccggGAGGCUUuUUUGAUGcUCCg -3'
miRNA:   3'- -CGGCGCG-----CUCUGGGuAAAUUGUuGGG- -5'
6501 3' -51.1 NC_001847.1 + 68225 0.66 0.990036
Target:  5'- gGCCGCgGCGGGGCCgCA---AGCAcGCUUg -3'
miRNA:   3'- -CGGCG-CGCUCUGG-GUaaaUUGU-UGGG- -5'
6501 3' -51.1 NC_001847.1 + 114391 0.66 0.990036
Target:  5'- cGCCGacgaagGCGAGGCCCGccucACcGCCg -3'
miRNA:   3'- -CGGCg-----CGCUCUGGGUaaauUGuUGGg -5'
6501 3' -51.1 NC_001847.1 + 62748 0.66 0.990036
Target:  5'- cCCGCGuCGGGGCCCGcguccACcACCa -3'
miRNA:   3'- cGGCGC-GCUCUGGGUaaau-UGuUGGg -5'
6501 3' -51.1 NC_001847.1 + 98767 0.66 0.990036
Target:  5'- cGgCGCGCGcuGCCCGggccgcGGCGGCgCCg -3'
miRNA:   3'- -CgGCGCGCucUGGGUaaa---UUGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 97974 0.66 0.990036
Target:  5'- cCCgGCGCGAGGCUg--UUGACcGCCa -3'
miRNA:   3'- cGG-CGCGCUCUGGguaAAUUGuUGGg -5'
6501 3' -51.1 NC_001847.1 + 33976 0.66 0.990036
Target:  5'- aCCGCGCcccGACCCcggcccCGGCCCc -3'
miRNA:   3'- cGGCGCGcu-CUGGGuaaauuGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 61331 0.66 0.990036
Target:  5'- gGCgGgGCGGGcgcgccuaGCCCAccggcaGGCAGCCCc -3'
miRNA:   3'- -CGgCgCGCUC--------UGGGUaaa---UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 46334 0.66 0.990036
Target:  5'- gGCCGCccGCGGGGCCgCGUc-GGCGGCa- -3'
miRNA:   3'- -CGGCG--CGCUCUGG-GUAaaUUGUUGgg -5'
6501 3' -51.1 NC_001847.1 + 19651 0.66 0.989634
Target:  5'- gGCCGCuuGCG-GGCCCGgccgccggaaacuGCGACCg -3'
miRNA:   3'- -CGGCG--CGCuCUGGGUaaau---------UGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 48944 0.66 0.989634
Target:  5'- aGgCGCGCGAcuggaccgcccccgGugCCGUcagacgcuUUAACGGCCUc -3'
miRNA:   3'- -CgGCGCGCU--------------CugGGUA--------AAUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 60967 0.66 0.989634
Target:  5'- cGCCGCGCGgcauGGGCCCcacgccgagaGGCgCCg -3'
miRNA:   3'- -CGGCGCGC----UCUGGGuaaauug---UUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 34253 0.66 0.989497
Target:  5'- cGCgGCGCGAGGCgCAgaccggcgcgcGGCGGCUg -3'
miRNA:   3'- -CGgCGCGCUCUGgGUaaa--------UUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 48643 0.66 0.989219
Target:  5'- cGCCGCGCGAcgGugCagcgccgcuGCAagaaGCCCg -3'
miRNA:   3'- -CGGCGCGCU--CugGguaaau---UGU----UGGG- -5'
6501 3' -51.1 NC_001847.1 + 38255 0.66 0.989219
Target:  5'- cCCGCGCGAGcacggcggucccucCCCAgcgcgGACcgccGCCCa -3'
miRNA:   3'- cGGCGCGCUCu-------------GGGUaaa--UUGu---UGGG- -5'
6501 3' -51.1 NC_001847.1 + 54113 0.66 0.988646
Target:  5'- cGCCGCGCGGGAggC-----GCAGCaCCg -3'
miRNA:   3'- -CGGCGCGCUCUggGuaaauUGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 100590 0.66 0.988646
Target:  5'- cGCCGCuGCaGcGGCCg----AGCAGCCCg -3'
miRNA:   3'- -CGGCG-CG-CuCUGGguaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 67980 0.66 0.988646
Target:  5'- cGCCgagaGCGgGGGGCCUGUc--AUGGCCCa -3'
miRNA:   3'- -CGG----CGCgCUCUGGGUAaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 33580 0.66 0.988646
Target:  5'- gGCCGUGCGcGGugCCGac-GACGuCCUg -3'
miRNA:   3'- -CGGCGCGC-UCugGGUaaaUUGUuGGG- -5'
6501 3' -51.1 NC_001847.1 + 38017 0.66 0.988646
Target:  5'- aGCuCGCGCGGGugCUGUgg-GCGcgcGCCg -3'
miRNA:   3'- -CG-GCGCGCUCugGGUAaauUGU---UGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.