miRNA display CGI


Results 21 - 40 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 132269 0.72 0.872715
Target:  5'- cGCgGCGCGGcGGCCCGcgcguCGGCCUg -3'
miRNA:   3'- -CGgCGCGCU-CUGGGUaaauuGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 132205 0.66 0.987111
Target:  5'- cGCCGCGCugGAGGCggCCGcgcUGGCGGCgCg -3'
miRNA:   3'- -CGGCGCG--CUCUG--GGUaa-AUUGUUGgG- -5'
6501 3' -51.1 NC_001847.1 + 132154 0.69 0.940849
Target:  5'- -gCGCGCGcGGCuCCAgcgcGCGGCCCc -3'
miRNA:   3'- cgGCGCGCuCUG-GGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 132115 0.7 0.930729
Target:  5'- gGCCGC-CGAGcuGCUCGgc--GCGGCCCg -3'
miRNA:   3'- -CGGCGcGCUC--UGGGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 131971 0.71 0.880139
Target:  5'- cGCCuGcCGCGAGGCgCuggaGGCGGCCCg -3'
miRNA:   3'- -CGG-C-GCGCUCUGgGuaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 131609 0.66 0.992414
Target:  5'- cGCCGCGCucgcGGCCguaGUcgGccACGGCCCg -3'
miRNA:   3'- -CGGCGCGcu--CUGGg--UAaaU--UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 131441 0.68 0.968498
Target:  5'- gGCgGcCGCGGGGCCC-----GCGGCCg -3'
miRNA:   3'- -CGgC-GCGCUCUGGGuaaauUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 131370 0.66 0.992414
Target:  5'- gGCgGCGCGGGcgacACCCGcgagggccucUggGACuGCCCc -3'
miRNA:   3'- -CGgCGCGCUC----UGGGU----------AaaUUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 131269 0.72 0.849089
Target:  5'- cGCCGCGCGAcGGgCCGccgccgcugGAgGGCCCg -3'
miRNA:   3'- -CGGCGCGCU-CUgGGUaaa------UUgUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 131163 0.73 0.787006
Target:  5'- gGCCGCGCGcccGGGCCCcc--GGC-GCCCu -3'
miRNA:   3'- -CGGCGCGC---UCUGGGuaaaUUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 131162 0.67 0.979326
Target:  5'- gGCCGCGCu-GGCgCugcucACGGCCCa -3'
miRNA:   3'- -CGGCGCGcuCUGgGuaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 130952 0.77 0.612805
Target:  5'- uGCCuGCGCGcGGCCCAcgggcgcGCGGCCCa -3'
miRNA:   3'- -CGG-CGCGCuCUGGGUaaau---UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 130601 0.7 0.935916
Target:  5'- cGCCGCGCc--ACCCGcg-GGCGGCCg -3'
miRNA:   3'- -CGGCGCGcucUGGGUaaaUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 130511 0.69 0.940849
Target:  5'- aGgCGCGCGAG-CgCCGgcgGGCcGCCCg -3'
miRNA:   3'- -CgGCGCGCUCuG-GGUaaaUUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 130260 0.72 0.872715
Target:  5'- aGCgGCGCgGGGGCCCugcc-GCuGCCCg -3'
miRNA:   3'- -CGgCGCG-CUCUGGGuaaauUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 130230 0.68 0.968498
Target:  5'- --aGCGCGGcGGCCC---UAACGACCg -3'
miRNA:   3'- cggCGCGCU-CUGGGuaaAUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 130151 0.67 0.98542
Target:  5'- cGCCGCGCuuuGCCgCGgccgccGCAGCCCc -3'
miRNA:   3'- -CGGCGCGcucUGG-GUaaau--UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 129919 0.66 0.987111
Target:  5'- uGCCGCGCGcGcCCCGcc-GGCcGCCg -3'
miRNA:   3'- -CGGCGCGCuCuGGGUaaaUUGuUGGg -5'
6501 3' -51.1 NC_001847.1 + 129520 0.72 0.865061
Target:  5'- gGCgCGCGCGGGACCgCGgcgccCAcGCCCg -3'
miRNA:   3'- -CG-GCGCGCUCUGG-GUaaauuGU-UGGG- -5'
6501 3' -51.1 NC_001847.1 + 129327 0.67 0.979326
Target:  5'- uGCCggGCGCGGGGCCgGgggcguuCGGCCa -3'
miRNA:   3'- -CGG--CGCGCUCUGGgUaaauu--GUUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.