miRNA display CGI


Results 1 - 20 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 135034 0.72 0.856384
Target:  5'- gGCCgggGCGCGgggcgccGGACCCAgg-GGCGgaGCCCa -3'
miRNA:   3'- -CGG---CGCGC-------UCUGGGUaaaUUGU--UGGG- -5'
6501 3' -51.1 NC_001847.1 + 134905 0.73 0.805627
Target:  5'- cGCCgggcgucgggGCGCGAGGCCCGggcucgGGCCCc -3'
miRNA:   3'- -CGG----------CGCGCUCUGGGUaaauugUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 134865 0.72 0.840785
Target:  5'- cCCGCGCG-GGCUCG----GCGGCCCc -3'
miRNA:   3'- cGGCGCGCuCUGGGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 134779 0.68 0.961787
Target:  5'- cGgCGCGCGGGGcgggcCCCGg--GGCGcgaaGCCCg -3'
miRNA:   3'- -CgGCGCGCUCU-----GGGUaaaUUGU----UGGG- -5'
6501 3' -51.1 NC_001847.1 + 134668 0.72 0.849089
Target:  5'- --gGCGCGGGcACCCAU--GACGGCgCCg -3'
miRNA:   3'- cggCGCGCUC-UGGGUAaaUUGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 134557 0.67 0.979326
Target:  5'- gGCCGCG-GAGGgCCAg-----GACCCg -3'
miRNA:   3'- -CGGCGCgCUCUgGGUaaauugUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 133967 0.68 0.971518
Target:  5'- gGCCGCgGCGGuGGCCUucUgcGCGGCCg -3'
miRNA:   3'- -CGGCG-CGCU-CUGGGuaAauUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 133750 0.72 0.865061
Target:  5'- cGCCGCGCGAGuACC-----GGCAGCgCg -3'
miRNA:   3'- -CGGCGCGCUC-UGGguaaaUUGUUGgG- -5'
6501 3' -51.1 NC_001847.1 + 133550 0.75 0.697012
Target:  5'- cGCCGCGCGcuGGCCCG---AGCGGCgCg -3'
miRNA:   3'- -CGGCGCGCu-CUGGGUaaaUUGUUGgG- -5'
6501 3' -51.1 NC_001847.1 + 133478 0.76 0.676117
Target:  5'- gGCCGCGCGAcGGCCCGgccgucgGGCAggcgcacguguACCUg -3'
miRNA:   3'- -CGGCGCGCU-CUGGGUaaa----UUGU-----------UGGG- -5'
6501 3' -51.1 NC_001847.1 + 133284 0.69 0.958084
Target:  5'- aGCCGCGCGGugcgcuccGGCgCAgaguGCGugCCg -3'
miRNA:   3'- -CGGCGCGCU--------CUGgGUaaauUGUugGG- -5'
6501 3' -51.1 NC_001847.1 + 133190 0.66 0.987111
Target:  5'- cGCCGCccgGCGAGgacgaGCgCCG----GCGGCCCg -3'
miRNA:   3'- -CGGCG---CGCUC-----UG-GGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 133057 0.76 0.665606
Target:  5'- cGCCGCGCGGGcCCCGcggGGCGcucGCCg -3'
miRNA:   3'- -CGGCGCGCUCuGGGUaaaUUGU---UGGg -5'
6501 3' -51.1 NC_001847.1 + 132886 0.71 0.894275
Target:  5'- cGCCGCGUGccGCCCGgg-GACuaccacacGCCCg -3'
miRNA:   3'- -CGGCGCGCucUGGGUaaaUUGu-------UGGG- -5'
6501 3' -51.1 NC_001847.1 + 132833 0.77 0.612805
Target:  5'- cCCGCGUgcuGGGGCCCAUgccgcccGGCGGCCCc -3'
miRNA:   3'- cGGCGCG---CUCUGGGUAaa-----UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 132782 0.73 0.81469
Target:  5'- gGgCGCGCGAcugGACCuCAU---GCGGCCCg -3'
miRNA:   3'- -CgGCGCGCU---CUGG-GUAaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 132727 0.73 0.783208
Target:  5'- cGCCGCG-GGGGCCCcucgggggagGACGACUCu -3'
miRNA:   3'- -CGGCGCgCUCUGGGuaaa------UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 132575 0.77 0.623369
Target:  5'- gGCCGCGCaGGcGCCCGcgccgaaGACAGCCCg -3'
miRNA:   3'- -CGGCGCGcUC-UGGGUaaa----UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 132459 0.71 0.887327
Target:  5'- cGCCGCGgGcGGACCCGgagGACGGgUCc -3'
miRNA:   3'- -CGGCGCgC-UCUGGGUaaaUUGUUgGG- -5'
6501 3' -51.1 NC_001847.1 + 132298 0.67 0.979095
Target:  5'- aGUCGCaGCGgcauggcGGACCCcgagaucGCAACCCu -3'
miRNA:   3'- -CGGCG-CGC-------UCUGGGuaaau--UGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.