miRNA display CGI


Results 81 - 100 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 33013 0.66 0.988646
Target:  5'- gGUCGCGCgGAGugCC-----GCcGCCCu -3'
miRNA:   3'- -CGGCGCG-CUCugGGuaaauUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 33580 0.66 0.988646
Target:  5'- gGCCGUGCGcGGugCCGac-GACGuCCUg -3'
miRNA:   3'- -CGGCGCGC-UCugGGUaaaUUGUuGGG- -5'
6501 3' -51.1 NC_001847.1 + 100590 0.66 0.988646
Target:  5'- cGCCGCuGCaGcGGCCg----AGCAGCCCg -3'
miRNA:   3'- -CGGCG-CG-CuCUGGguaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 38017 0.66 0.988646
Target:  5'- aGCuCGCGCGGGugCUGUgg-GCGcgcGCCg -3'
miRNA:   3'- -CG-GCGCGCUCugGGUAaauUGU---UGGg -5'
6501 3' -51.1 NC_001847.1 + 44950 0.66 0.988646
Target:  5'- gGCUGgGCGAcGGCgCGccgcAGCAGCCCc -3'
miRNA:   3'- -CGGCgCGCU-CUGgGUaaa-UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 97808 0.66 0.988646
Target:  5'- gGUCGCGCGcguGGCCgCGUcgGgcGCGugCCg -3'
miRNA:   3'- -CGGCGCGCu--CUGG-GUAaaU--UGUugGG- -5'
6501 3' -51.1 NC_001847.1 + 62541 0.66 0.988646
Target:  5'- uGCCGUGCGGccagcaGCgCGUUUuggccCAGCCCg -3'
miRNA:   3'- -CGGCGCGCUc-----UGgGUAAAuu---GUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 54113 0.66 0.988646
Target:  5'- cGCCGCGCGGGAggC-----GCAGCaCCg -3'
miRNA:   3'- -CGGCGCGCUCUggGuaaauUGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 117312 0.66 0.988646
Target:  5'- aGCCGCGaUGGgcGACCUAgcggcggggGGCGGCCUc -3'
miRNA:   3'- -CGGCGC-GCU--CUGGGUaaa------UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 67980 0.66 0.988646
Target:  5'- cGCCgagaGCGgGGGGCCUGUc--AUGGCCCa -3'
miRNA:   3'- -CGG----CGCgCUCUGGGUAaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 111892 0.66 0.988646
Target:  5'- gGCCGC-CGAuGACCUcgUgaacguCAACCUc -3'
miRNA:   3'- -CGGCGcGCU-CUGGGuaAauu---GUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 103265 0.66 0.988646
Target:  5'- uCCGCGCGAcgGGCuCCGccggcAGCAACgCCg -3'
miRNA:   3'- cGGCGCGCU--CUG-GGUaaa--UUGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 107451 0.66 0.988646
Target:  5'- cGCCGCGUGcgccGGCgCUAUaaaGGCAGCUCg -3'
miRNA:   3'- -CGGCGCGCu---CUG-GGUAaa-UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 100758 0.66 0.988646
Target:  5'- uGCCGCgGCGGcGGCCgCcgUUGuuuCGGCCg -3'
miRNA:   3'- -CGGCG-CGCU-CUGG-GuaAAUu--GUUGGg -5'
6501 3' -51.1 NC_001847.1 + 76292 0.66 0.988646
Target:  5'- cGCCccggguagGUGCGGGcccgGCCCAagUGcCGACCCu -3'
miRNA:   3'- -CGG--------CGCGCUC----UGGGUaaAUuGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 104602 0.66 0.988646
Target:  5'- aGCCGCGCGAcGAgCUCGgc-GACGucgcGCUCg -3'
miRNA:   3'- -CGGCGCGCU-CU-GGGUaaaUUGU----UGGG- -5'
6501 3' -51.1 NC_001847.1 + 19857 0.66 0.988646
Target:  5'- cCCGCGCccgGGGGCgCCGgcu--UAGCCCg -3'
miRNA:   3'- cGGCGCG---CUCUG-GGUaaauuGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 39497 0.66 0.988646
Target:  5'- cGCCGCGCaGGcuCCCGgugAACAcCUCg -3'
miRNA:   3'- -CGGCGCGcUCu-GGGUaaaUUGUuGGG- -5'
6501 3' -51.1 NC_001847.1 + 75872 0.66 0.988646
Target:  5'- cGCCGC-CGGGGCUCGag-AGCcaaaucauGGCCCu -3'
miRNA:   3'- -CGGCGcGCUCUGGGUaaaUUG--------UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 104326 0.66 0.9885
Target:  5'- aGCCGCGCGuaggcGGCCuCGgcgcGCGcgaaggcGCCCg -3'
miRNA:   3'- -CGGCGCGCu----CUGG-GUaaauUGU-------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.