miRNA display CGI


Results 61 - 80 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 14137 0.68 0.974325
Target:  5'- -aUGgGCGGGGCCCGcgccugGGCGGCCg -3'
miRNA:   3'- cgGCgCGCUCUGGGUaaa---UUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 14311 0.66 0.991289
Target:  5'- gGCCGCcucuCGGGGCCuCAUcgAGCGGCg- -3'
miRNA:   3'- -CGGCGc---GCUCUGG-GUAaaUUGUUGgg -5'
6501 3' -51.1 NC_001847.1 + 14865 0.66 0.987111
Target:  5'- gGCCGgGCGAc-CCCAUggucgaaAGCCCc -3'
miRNA:   3'- -CGGCgCGCUcuGGGUAaauug--UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 15023 0.69 0.945529
Target:  5'- gGCCGCGCGAG-CC------GCGGCCg -3'
miRNA:   3'- -CGGCGCGCUCuGGguaaauUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 15050 0.73 0.787006
Target:  5'- aGCUGUGCGAG-CgCCAUcUGaccgGCGGCCCg -3'
miRNA:   3'- -CGGCGCGCUCuG-GGUAaAU----UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 15091 0.71 0.887327
Target:  5'- uGCgGCaGCGGGGCCgcgcuCAUgcUGACGGCCCu -3'
miRNA:   3'- -CGgCG-CGCUCUGG-----GUAa-AUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 15302 0.67 0.979326
Target:  5'- gGCUGCGCGcGGGCg---UgcGCGACCCg -3'
miRNA:   3'- -CGGCGCGC-UCUGgguaAauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 15600 0.67 0.979326
Target:  5'- gGCCGCGCGccccuuGCCCAgccUGcCGGCCg -3'
miRNA:   3'- -CGGCGCGCuc----UGGGUaa-AUuGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 15889 0.69 0.945529
Target:  5'- aGCCGCGCGGGcGCCgcCAUaau-CAGuCCCa -3'
miRNA:   3'- -CGGCGCGCUC-UGG--GUAaauuGUU-GGG- -5'
6501 3' -51.1 NC_001847.1 + 16160 0.66 0.992414
Target:  5'- gGCCgGgGCGAccGCCCcgUUGGCcgcgGACCCc -3'
miRNA:   3'- -CGG-CgCGCUc-UGGGuaAAUUG----UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 16268 0.69 0.945529
Target:  5'- cCCGUGCaccGAGcGCCCGggUAAucCAACCCg -3'
miRNA:   3'- cGGCGCG---CUC-UGGGUaaAUU--GUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 16408 0.69 0.940849
Target:  5'- aGCCGCGCGGGGCgaGUguaucucUAGucGCCCg -3'
miRNA:   3'- -CGGCGCGCUCUGggUAa------AUUguUGGG- -5'
6501 3' -51.1 NC_001847.1 + 16663 0.66 0.987111
Target:  5'- gGCgGCGCG-GGCgCGUcgcGCAGCCUu -3'
miRNA:   3'- -CGgCGCGCuCUGgGUAaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 16719 0.69 0.958084
Target:  5'- aGCCccacgGCGcCGAGACCgCAggcGACGGCCa -3'
miRNA:   3'- -CGG-----CGC-GCUCUGG-GUaaaUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 16783 0.67 0.976925
Target:  5'- gGCCGgGCGAGGCgUCGUacgUGGCggUCg -3'
miRNA:   3'- -CGGCgCGCUCUG-GGUAa--AUUGuuGGg -5'
6501 3' -51.1 NC_001847.1 + 17588 0.66 0.987111
Target:  5'- aGCaCGgGCGGGGCCCGcggaaaggggUUGcgcACGGCCUc -3'
miRNA:   3'- -CG-GCgCGCUCUGGGUa---------AAU---UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 17634 0.66 0.990036
Target:  5'- cGCCGCGCGuGGagCGg--AACcuGCCCa -3'
miRNA:   3'- -CGGCGCGCuCUggGUaaaUUGu-UGGG- -5'
6501 3' -51.1 NC_001847.1 + 17866 0.68 0.974325
Target:  5'- --gGCGCGGGGcgcCCCAaaacGGCGGCCCc -3'
miRNA:   3'- cggCGCGCUCU---GGGUaaa-UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 18364 0.67 0.979326
Target:  5'- aGCCGUucauucgucgGCGcAGACCCAgca---GGCCCc -3'
miRNA:   3'- -CGGCG----------CGC-UCUGGGUaaauugUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 18452 0.69 0.940849
Target:  5'- aGCCGUGCG-GugCCGcgcccGCAGCgCCg -3'
miRNA:   3'- -CGGCGCGCuCugGGUaaau-UGUUG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.