miRNA display CGI


Results 61 - 80 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 5' -63.1 NC_001847.1 + 86643 0.66 0.550228
Target:  5'- gCGGGCCGCgccgCccCGGagcgcgCCGCgCUCg -3'
miRNA:   3'- aGCCCGGCGa---GuuGCCga----GGCGgGAG- -5'
6501 5' -63.1 NC_001847.1 + 104598 0.66 0.550228
Target:  5'- gCGGaGCCGCgCGACGaGCUCggcgacguCGCgCUCg -3'
miRNA:   3'- aGCC-CGGCGaGUUGC-CGAG--------GCGgGAG- -5'
6501 5' -63.1 NC_001847.1 + 115753 0.66 0.550228
Target:  5'- aUGGGCacacacacCGCUUGAUGGCggCgGCCCUg -3'
miRNA:   3'- aGCCCG--------GCGAGUUGCCGa-GgCGGGAg -5'
6501 5' -63.1 NC_001847.1 + 48392 0.66 0.546379
Target:  5'- cCGGGCCGggcCUCGGCGGCaaagcgggacgcgUCGCCggcgCUCg -3'
miRNA:   3'- aGCCCGGC---GAGUUGCCGa------------GGCGG----GAG- -5'
6501 5' -63.1 NC_001847.1 + 88933 0.66 0.540621
Target:  5'- cCGcGGCCgGCcCGGCGGCggCCGCCg-- -3'
miRNA:   3'- aGC-CCGG-CGaGUUGCCGa-GGCGGgag -5'
6501 5' -63.1 NC_001847.1 + 23311 0.66 0.540621
Target:  5'- cUCGGcGCCGCUgAGCcGCgccaCGUCCUUg -3'
miRNA:   3'- -AGCC-CGGCGAgUUGcCGag--GCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 53617 0.66 0.540621
Target:  5'- gCGGGCgGCggGGUGGCaCCGCCCg- -3'
miRNA:   3'- aGCCCGgCGagUUGCCGaGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 18977 0.66 0.540621
Target:  5'- gCGcGGCCGCggCGcccGCGGCcgCCaGCgCCUCg -3'
miRNA:   3'- aGC-CCGGCGa-GU---UGCCGa-GG-CG-GGAG- -5'
6501 5' -63.1 NC_001847.1 + 30359 0.66 0.540621
Target:  5'- cCGGGgaggCGCU-GGCGGCgCCGCCCg- -3'
miRNA:   3'- aGCCCg---GCGAgUUGCCGaGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 50782 0.66 0.540621
Target:  5'- cCGcGGCCGCUCAauacaccucGCGGCgcugCgGCCg-- -3'
miRNA:   3'- aGC-CCGGCGAGU---------UGCCGa---GgCGGgag -5'
6501 5' -63.1 NC_001847.1 + 133172 0.66 0.540621
Target:  5'- cCGGGgaggCGCU-GGCGGCgCCGCCCg- -3'
miRNA:   3'- aGCCCg---GCGAgUUGCCGaGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 76535 0.66 0.540621
Target:  5'- gCGGGCgCGCUggcCAGCGuGUUaCUGCCCa- -3'
miRNA:   3'- aGCCCG-GCGA---GUUGC-CGA-GGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 89866 0.66 0.540621
Target:  5'- --aGGCCgGCUCGccGCGGCgggcuucgCCGCgCUCa -3'
miRNA:   3'- agcCCGG-CGAGU--UGCCGa-------GGCGgGAG- -5'
6501 5' -63.1 NC_001847.1 + 2664 0.66 0.539663
Target:  5'- uUCGcccGGCgGCUCGGCcggcaucGGCUCguccuccgCGCCCUCc -3'
miRNA:   3'- -AGC---CCGgCGAGUUG-------CCGAG--------GCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 91302 0.66 0.53775
Target:  5'- cUCGGGCuccagcagcgccagCGCggcaaagaAGCGGCcgccgUCGCCCUCg -3'
miRNA:   3'- -AGCCCG--------------GCGag------UUGCCGa----GGCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 21970 0.66 0.531071
Target:  5'- -gGGGCU-UUCGGCGGCggCC-CCCUCg -3'
miRNA:   3'- agCCCGGcGAGUUGCCGa-GGcGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 15579 0.66 0.531071
Target:  5'- aUC-GGCgGCaggCGGCGGCUCguaGCCCUUc -3'
miRNA:   3'- -AGcCCGgCGa--GUUGCCGAGg--CGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 17133 0.66 0.531071
Target:  5'- gCuGG-CGCUCc-CGGCUUCGUCCUCg -3'
miRNA:   3'- aGcCCgGCGAGuuGCCGAGGCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 91682 0.66 0.531071
Target:  5'- cUGcGGCUGCggcuGCGGCUCCcgcuucGCUCUCg -3'
miRNA:   3'- aGC-CCGGCGagu-UGCCGAGG------CGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 99847 0.66 0.531071
Target:  5'- gCGcGCCGCUCGGCGGggCUGCgcaguacguuaCCUCu -3'
miRNA:   3'- aGCcCGGCGAGUUGCCgaGGCG-----------GGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.