miRNA display CGI


Results 41 - 60 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 5' -63.1 NC_001847.1 + 67320 0.66 0.559887
Target:  5'- uUUGGGCCGCgcggacgCcGCGGCUuuGUCg-- -3'
miRNA:   3'- -AGCCCGGCGa------GuUGCCGAggCGGgag -5'
6501 5' -63.1 NC_001847.1 + 85568 0.66 0.559887
Target:  5'- cUCGGccGUCGuCUCAACGGCgCCGUCgaCg -3'
miRNA:   3'- -AGCC--CGGC-GAGUUGCCGaGGCGGgaG- -5'
6501 5' -63.1 NC_001847.1 + 14515 0.66 0.559887
Target:  5'- -aGGGaaagaCGuCUCGGCGGCgcucgCUGCCCg- -3'
miRNA:   3'- agCCCg----GC-GAGUUGCCGa----GGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 100621 0.66 0.559887
Target:  5'- gCGGGCgGCgcaUCGcCGGCgCCGUCCg- -3'
miRNA:   3'- aGCCCGgCG---AGUuGCCGaGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 103408 0.66 0.559887
Target:  5'- aCGcGCCGCUCGACauagGGCUCguCGUCCa- -3'
miRNA:   3'- aGCcCGGCGAGUUG----CCGAG--GCGGGag -5'
6501 5' -63.1 NC_001847.1 + 70953 0.66 0.559887
Target:  5'- -aGGGUCGC-CAGCGucGCgcccgCCGCCC-Cg -3'
miRNA:   3'- agCCCGGCGaGUUGC--CGa----GGCGGGaG- -5'
6501 5' -63.1 NC_001847.1 + 34140 0.66 0.559887
Target:  5'- gCGGcaguaacuGCCGCcgCGGCGGCaccuUCCGUCgCUCg -3'
miRNA:   3'- aGCC--------CGGCGa-GUUGCCG----AGGCGG-GAG- -5'
6501 5' -63.1 NC_001847.1 + 31428 0.66 0.559887
Target:  5'- gCGGGCgGCggcCGGCGGCcgcggCgGCCC-Cg -3'
miRNA:   3'- aGCCCGgCGa--GUUGCCGa----GgCGGGaG- -5'
6501 5' -63.1 NC_001847.1 + 114254 0.66 0.559887
Target:  5'- ---uGCCGCUgCGGgGGCgUCCGCCCa- -3'
miRNA:   3'- agccCGGCGA-GUUgCCG-AGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 69629 0.66 0.559887
Target:  5'- cCGGGCgGCcgCAcuGCGcGCgCCGCCC-Ca -3'
miRNA:   3'- aGCCCGgCGa-GU--UGC-CGaGGCGGGaG- -5'
6501 5' -63.1 NC_001847.1 + 52745 0.66 0.559887
Target:  5'- aUGGGCguccCGgaCaAGCGGC-CCGCCCUg -3'
miRNA:   3'- aGCCCG----GCgaG-UUGCCGaGGCGGGAg -5'
6501 5' -63.1 NC_001847.1 + 134241 0.66 0.559887
Target:  5'- gCGGGCgGCggcCGGCGGCcgcggCgGCCC-Cg -3'
miRNA:   3'- aGCCCGgCGa--GUUGCCGa----GgCGGGaG- -5'
6501 5' -63.1 NC_001847.1 + 73949 0.66 0.559887
Target:  5'- cCGGaGaCCuCUCucACGGCgaccuagCCGCCCUCc -3'
miRNA:   3'- aGCC-C-GGcGAGu-UGCCGa------GGCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 56886 0.66 0.559887
Target:  5'- aCGGGcCCGCcggCGACGGCgaCGCCg-- -3'
miRNA:   3'- aGCCC-GGCGa--GUUGCCGagGCGGgag -5'
6501 5' -63.1 NC_001847.1 + 80908 0.66 0.559887
Target:  5'- gCGuGGCCGCccaAGCGGCcguggCCGCCgUg -3'
miRNA:   3'- aGC-CCGGCGag-UUGCCGa----GGCGGgAg -5'
6501 5' -63.1 NC_001847.1 + 87701 0.66 0.559887
Target:  5'- gCGGcGCCGCggCGGCGGCgaagCCGacgaCgUCg -3'
miRNA:   3'- aGCC-CGGCGa-GUUGCCGa---GGCg---GgAG- -5'
6501 5' -63.1 NC_001847.1 + 51402 0.66 0.559887
Target:  5'- gCGGcGCCGaaccuugCGGCGGCgcagacggagCCGCCCg- -3'
miRNA:   3'- aGCC-CGGCga-----GUUGCCGa---------GGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 39688 0.66 0.556984
Target:  5'- cCGGGCCGUugacccuaccguuaUCGGaucUGGCUCUGCgCUg -3'
miRNA:   3'- aGCCCGGCG--------------AGUU---GCCGAGGCGgGAg -5'
6501 5' -63.1 NC_001847.1 + 9810 0.66 0.554086
Target:  5'- --cGGCCGCUgGcguucagcGCGGCUCCgaaaacgcccaaggcGCCCUg -3'
miRNA:   3'- agcCCGGCGAgU--------UGCCGAGG---------------CGGGAg -5'
6501 5' -63.1 NC_001847.1 + 26371 0.66 0.550228
Target:  5'- gUGGGCCGCcCGGCaGCgUCCggcGCCCa- -3'
miRNA:   3'- aGCCCGGCGaGUUGcCG-AGG---CGGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.