miRNA display CGI


Results 41 - 60 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 5' -63.1 NC_001847.1 + 13474 0.72 0.239242
Target:  5'- cUCGGGCCGCaccccaCAGCGGCg--GCCUUCc -3'
miRNA:   3'- -AGCCCGGCGa-----GUUGCCGaggCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 13720 1.08 0.000674
Target:  5'- gUCGGGCCGCUCAACGGCUCCGCCCUCc -3'
miRNA:   3'- -AGCCCGGCGAGUUGCCGAGGCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 13927 0.7 0.357906
Target:  5'- cUCGGuGCCGCgCcGCGGCaggggggCCGCCC-Cg -3'
miRNA:   3'- -AGCC-CGGCGaGuUGCCGa------GGCGGGaG- -5'
6501 5' -63.1 NC_001847.1 + 14076 0.7 0.313528
Target:  5'- cUUGGGCCGCUCGugGacaucgcggaggcGCUggcggaccacCCGCaCCUCg -3'
miRNA:   3'- -AGCCCGGCGAGUugC-------------CGA----------GGCG-GGAG- -5'
6501 5' -63.1 NC_001847.1 + 14426 0.68 0.416541
Target:  5'- gCGGGUCGCgacugccUCGACGGCgccggggugcgcggCCGCggCCUCu -3'
miRNA:   3'- aGCCCGGCG-------AGUUGCCGa-------------GGCG--GGAG- -5'
6501 5' -63.1 NC_001847.1 + 14515 0.66 0.559887
Target:  5'- -aGGGaaagaCGuCUCGGCGGCgcucgCUGCCCg- -3'
miRNA:   3'- agCCCg----GC-GAGUUGCCGa----GGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 15405 0.72 0.239242
Target:  5'- -gGGGCCGggUuuCGGCU-CGCCCUCg -3'
miRNA:   3'- agCCCGGCgaGuuGCCGAgGCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 15483 0.68 0.453712
Target:  5'- -gGGGCCGC-CGuugcccucccgccCGGCUgccCCGUCCUCg -3'
miRNA:   3'- agCCCGGCGaGUu------------GCCGA---GGCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 15567 0.67 0.512161
Target:  5'- gUCGGGCCGCg--GCcGCcgCUGCCCg- -3'
miRNA:   3'- -AGCCCGGCGaguUGcCGa-GGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 15579 0.66 0.531071
Target:  5'- aUC-GGCgGCaggCGGCGGCUCguaGCCCUUc -3'
miRNA:   3'- -AGcCCGgCGa--GUUGCCGAGg--CGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 16200 0.67 0.475226
Target:  5'- aCGGGCUGCUC-GCGGCcgUCUGCg--- -3'
miRNA:   3'- aGCCCGGCGAGuUGCCG--AGGCGggag -5'
6501 5' -63.1 NC_001847.1 + 16632 0.67 0.466199
Target:  5'- -gGGGgCGCg--GCGGCUuuGCCgUCg -3'
miRNA:   3'- agCCCgGCGaguUGCCGAggCGGgAG- -5'
6501 5' -63.1 NC_001847.1 + 16917 0.71 0.280991
Target:  5'- cCGGGCCGCUCGGCGcagacgccGgUCUGCUCa- -3'
miRNA:   3'- aGCCCGGCGAGUUGC--------CgAGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 17002 0.69 0.364815
Target:  5'- cUCGGGgacgcagcgcgccUCGCa-GACGGCcucgCCGCCCUCg -3'
miRNA:   3'- -AGCCC-------------GGCGagUUGCCGa---GGCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 17133 0.66 0.531071
Target:  5'- gCuGG-CGCUCc-CGGCUUCGUCCUCg -3'
miRNA:   3'- aGcCCgGCGAGuuGCCGAGGCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 17925 0.69 0.405675
Target:  5'- gCGGGUCguGCUCGgacacggacgGCGGCUCCGgCgUCc -3'
miRNA:   3'- aGCCCGG--CGAGU----------UGCCGAGGCgGgAG- -5'
6501 5' -63.1 NC_001847.1 + 18977 0.66 0.540621
Target:  5'- gCGcGGCCGCggCGcccGCGGCcgCCaGCgCCUCg -3'
miRNA:   3'- aGC-CCGGCGa-GU---UGCCGa-GG-CG-GGAG- -5'
6501 5' -63.1 NC_001847.1 + 19351 0.7 0.335544
Target:  5'- gCGGaGCCGC--AGCGGCUCCGCgaacgCUCu -3'
miRNA:   3'- aGCC-CGGCGagUUGCCGAGGCGg----GAG- -5'
6501 5' -63.1 NC_001847.1 + 19448 0.75 0.171282
Target:  5'- aCGGGCCGCagc-CGGCUCuCGCCCcCg -3'
miRNA:   3'- aGCCCGGCGaguuGCCGAG-GCGGGaG- -5'
6501 5' -63.1 NC_001847.1 + 19747 0.67 0.497236
Target:  5'- gCGGGCCGCUUAgcgggaaggcgggguGCgGGCUCgGCgCa- -3'
miRNA:   3'- aGCCCGGCGAGU---------------UG-CCGAGgCGgGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.