miRNA display CGI


Results 41 - 60 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 5' -63.1 NC_001847.1 + 19448 0.75 0.171282
Target:  5'- aCGGGCCGCagc-CGGCUCuCGCCCcCg -3'
miRNA:   3'- aGCCCGGCGaguuGCCGAG-GCGGGaG- -5'
6501 5' -63.1 NC_001847.1 + 69112 0.76 0.145646
Target:  5'- gCGGGCCGCguucucggCGuacguggucuuuggcGCGGCgUCCGCCUUCg -3'
miRNA:   3'- aGCCCGGCGa-------GU---------------UGCCG-AGGCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 92175 0.76 0.137225
Target:  5'- cCGGGCCgGC-CGGCGGC-CCGCCCc- -3'
miRNA:   3'- aGCCCGG-CGaGUUGCCGaGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 134377 0.77 0.118095
Target:  5'- cCGGcGCCGC-CGGCGGCgggCCGgCCUCg -3'
miRNA:   3'- aGCC-CGGCGaGUUGCCGa--GGCgGGAG- -5'
6501 5' -63.1 NC_001847.1 + 94245 0.77 0.115159
Target:  5'- gCGGcGCCGUggAGCGGCUCgCGCCCUg -3'
miRNA:   3'- aGCC-CGGCGagUUGCCGAG-GCGGGAg -5'
6501 5' -63.1 NC_001847.1 + 32996 0.73 0.222997
Target:  5'- gCGGGCCGCgccgccguggUCGcGCGGagugccgCCGCCCUCu -3'
miRNA:   3'- aGCCCGGCG----------AGU-UGCCga-----GGCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 21968 0.73 0.222997
Target:  5'- cUGGGCCGCggCGcCGGUUgCCGCCCg- -3'
miRNA:   3'- aGCCCGGCGa-GUuGCCGA-GGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 21373 0.71 0.280991
Target:  5'- cUCGGGCCGcCUCgGGCGGCUCgucaGCgacgauuauaCCUCg -3'
miRNA:   3'- -AGCCCGGC-GAG-UUGCCGAGg---CG----------GGAG- -5'
6501 5' -63.1 NC_001847.1 + 16917 0.71 0.280991
Target:  5'- cCGGGCCGCUCGGCGcagacgccGgUCUGCUCa- -3'
miRNA:   3'- aGCCCGGCGAGUUGC--------CgAGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 124253 0.71 0.27469
Target:  5'- gCGGGCCaaaGCUC--CGGCUCC-CCCUUc -3'
miRNA:   3'- aGCCCGG---CGAGuuGCCGAGGcGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 105078 0.71 0.27469
Target:  5'- cCGGGCgGCacgCGGCGGaagCCGCCgUCg -3'
miRNA:   3'- aGCCCGgCGa--GUUGCCga-GGCGGgAG- -5'
6501 5' -63.1 NC_001847.1 + 20028 0.71 0.27469
Target:  5'- -aGGGCgGCcCuGCGGCcgCCGCCCUg -3'
miRNA:   3'- agCCCGgCGaGuUGCCGa-GGCGGGAg -5'
6501 5' -63.1 NC_001847.1 + 27995 0.72 0.268503
Target:  5'- cUGGGCCGCgcugCAgcgcGCGGCgugCCGCgCUUa -3'
miRNA:   3'- aGCCCGGCGa---GU----UGCCGa--GGCGgGAG- -5'
6501 5' -63.1 NC_001847.1 + 82717 0.72 0.268503
Target:  5'- gCGGGCCcgcuucgaGCUCGACaGCgcgcgCCGCCCg- -3'
miRNA:   3'- aGCCCGG--------CGAGUUGcCGa----GGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 6950 0.72 0.268503
Target:  5'- aCGGGCCagGCgcggggucgCGGCGGCgcuUCCGCCCg- -3'
miRNA:   3'- aGCCCGG--CGa--------GUUGCCG---AGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 103581 0.72 0.244873
Target:  5'- cCGGcccGCCGC-CGGCGGCgCCGgCCUCg -3'
miRNA:   3'- aGCC---CGGCGaGUUGCCGaGGCgGGAG- -5'
6501 5' -63.1 NC_001847.1 + 77617 0.72 0.244873
Target:  5'- gCGGcGCCGCUgGgcgaggACGGCgcgCCGCCCg- -3'
miRNA:   3'- aGCC-CGGCGAgU------UGCCGa--GGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 105505 0.72 0.239242
Target:  5'- cCGGGuCCGC-CcGCGGCgccCCGgCCCUCa -3'
miRNA:   3'- aGCCC-GGCGaGuUGCCGa--GGC-GGGAG- -5'
6501 5' -63.1 NC_001847.1 + 13474 0.72 0.239242
Target:  5'- cUCGGGCCGCaccccaCAGCGGCg--GCCUUCc -3'
miRNA:   3'- -AGCCCGGCGa-----GUUGCCGaggCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 31949 0.73 0.235916
Target:  5'- gCGGacgagccuGCCGCggCGGCGGCgggccccguggacgCCGCCCUCg -3'
miRNA:   3'- aGCC--------CGGCGa-GUUGCCGa-------------GGCGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.