Results 41 - 60 of 331 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6501 | 5' | -63.1 | NC_001847.1 | + | 768 | 0.72 | 0.244873 |
Target: 5'- cCGGcccGCCGC-CGGCGGCgCCGgCCUCg -3' miRNA: 3'- aGCC---CGGCGaGUUGCCGaGGCgGGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 105629 | 0.72 | 0.244873 |
Target: 5'- gCGGGCgaGCUCuGCGGCcgaagcgCCGCCCg- -3' miRNA: 3'- aGCCCGg-CGAGuUGCCGa------GGCGGGag -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 82632 | 0.72 | 0.250614 |
Target: 5'- cCGGGCCGCgcggCcGCGcGCUCCGUCagCUCc -3' miRNA: 3'- aGCCCGGCGa---GuUGC-CGAGGCGG--GAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 59662 | 0.72 | 0.250614 |
Target: 5'- cCGGcGCCGcCUCGACGGCcucuuugUCGCCgUCg -3' miRNA: 3'- aGCC-CGGC-GAGUUGCCGa------GGCGGgAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 53665 | 0.72 | 0.256465 |
Target: 5'- cCGGGCCGCUCAACuGCcgCCaGCCg-- -3' miRNA: 3'- aGCCCGGCGAGUUGcCGa-GG-CGGgag -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 12355 | 0.72 | 0.256465 |
Target: 5'- gUGGGCCugGCUCGggagcgucgGCGGCUgCGgCCUCg -3' miRNA: 3'- aGCCCGG--CGAGU---------UGCCGAgGCgGGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 119390 | 0.72 | 0.262428 |
Target: 5'- gCGGGCCGCccgCGuCGGCauaggCGCCCUCc -3' miRNA: 3'- aGCCCGGCGa--GUuGCCGag---GCGGGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 82717 | 0.72 | 0.268503 |
Target: 5'- gCGGGCCcgcuucgaGCUCGACaGCgcgcgCCGCCCg- -3' miRNA: 3'- aGCCCGG--------CGAGUUGcCGa----GGCGGGag -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 27995 | 0.72 | 0.268503 |
Target: 5'- cUGGGCCGCgcugCAgcgcGCGGCgugCCGCgCUUa -3' miRNA: 3'- aGCCCGGCGa---GU----UGCCGa--GGCGgGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 6950 | 0.72 | 0.268503 |
Target: 5'- aCGGGCCagGCgcggggucgCGGCGGCgcuUCCGCCCg- -3' miRNA: 3'- aGCCCGG--CGa--------GUUGCCG---AGGCGGGag -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 20028 | 0.71 | 0.27469 |
Target: 5'- -aGGGCgGCcCuGCGGCcgCCGCCCUg -3' miRNA: 3'- agCCCGgCGaGuUGCCGa-GGCGGGAg -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 105078 | 0.71 | 0.27469 |
Target: 5'- cCGGGCgGCacgCGGCGGaagCCGCCgUCg -3' miRNA: 3'- aGCCCGgCGa--GUUGCCga-GGCGGgAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 124253 | 0.71 | 0.27469 |
Target: 5'- gCGGGCCaaaGCUC--CGGCUCC-CCCUUc -3' miRNA: 3'- aGCCCGG---CGAGuuGCCGAGGcGGGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 129609 | 0.71 | 0.27469 |
Target: 5'- cUGGGCCGC-CGucACGaGCgucgCCGCCCUa -3' miRNA: 3'- aGCCCGGCGaGU--UGC-CGa---GGCGGGAg -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 21440 | 0.71 | 0.27469 |
Target: 5'- gCGGGCCaaaGCUC--CGGCUCC-CCCUUc -3' miRNA: 3'- aGCCCGG---CGAGuuGCCGAGGcGGGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 2265 | 0.71 | 0.27469 |
Target: 5'- cCGGGCgGCacgCGGCGGaagCCGCCgUCg -3' miRNA: 3'- aGCCCGgCGa--GUUGCCga-GGCGGgAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 16917 | 0.71 | 0.280991 |
Target: 5'- cCGGGCCGCUCGGCGcagacgccGgUCUGCUCa- -3' miRNA: 3'- aGCCCGGCGAGUUGC--------CgAGGCGGGag -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 129236 | 0.71 | 0.280991 |
Target: 5'- aUGGGCCcggGCgcacaaucugCGACGGCgcggCCGCCCUg -3' miRNA: 3'- aGCCCGG---CGa---------GUUGCCGa---GGCGGGAg -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 21373 | 0.71 | 0.280991 |
Target: 5'- cUCGGGCCGcCUCgGGCGGCUCgucaGCgacgauuauaCCUCg -3' miRNA: 3'- -AGCCCGGC-GAG-UUGCCGAGg---CG----------GGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 3864 | 0.71 | 0.287407 |
Target: 5'- gCGGGCC-CUcCAGCGGCggCgGCCCgUCg -3' miRNA: 3'- aGCCCGGcGA-GUUGCCGa-GgCGGG-AG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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